Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP54Q70EL1 HMGA1P1-201ENST00000415560 1062 ntBASIC18.96■□□□□ 0.63
USP54Q70EL1 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC18.96■□□□□ 0.63
USP54Q70EL1 BPIFB5P-201ENST00000457066 1099 ntBASIC18.96■□□□□ 0.63
USP54Q70EL1 COQ10BP2-201ENST00000513804 724 ntBASIC18.96■□□□□ 0.63
USP54Q70EL1 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP54Q70EL1 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP54Q70EL1 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP54Q70EL1 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
USP54Q70EL1 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC18.96■□□□□ 0.63
USP54Q70EL1 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP54Q70EL1 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
USP54Q70EL1 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP54Q70EL1 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP54Q70EL1 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP54Q70EL1 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
USP54Q70EL1 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP54Q70EL1 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC18.96■□□□□ 0.63
USP54Q70EL1 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.96■□□□□ 0.63
USP54Q70EL1 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP54Q70EL1 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC18.95■□□□□ 0.62
USP54Q70EL1 AC138761.6-201ENST00000583997 1423 ntBASIC18.95■□□□□ 0.62
USP54Q70EL1 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP54Q70EL1 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP54Q70EL1 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP54Q70EL1 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC18.95■□□□□ 0.62
USP54Q70EL1 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC18.95■□□□□ 0.62
USP54Q70EL1 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP54Q70EL1 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
USP54Q70EL1 RN7SL596P-201ENST00000582123 288 ntBASIC18.95■□□□□ 0.62
USP54Q70EL1 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
USP54Q70EL1 AC026336.4-201ENST00000624565 1050 ntBASIC18.95■□□□□ 0.62
USP54Q70EL1 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP54Q70EL1 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC18.95■□□□□ 0.62
USP54Q70EL1 AP001267.2-201ENST00000532619 2086 ntBASIC18.95■□□□□ 0.62
USP54Q70EL1 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP54Q70EL1 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC18.95■□□□□ 0.62
USP54Q70EL1 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP54Q70EL1 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP54Q70EL1 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
USP54Q70EL1 TBC1D27-202ENST00000424239 1573 ntBASIC18.95■□□□□ 0.62
USP54Q70EL1 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP54Q70EL1 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP54Q70EL1 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP54Q70EL1 OR2W2P-201ENST00000406313 909 ntBASIC18.95■□□□□ 0.62
USP54Q70EL1 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC18.95■□□□□ 0.62
USP54Q70EL1 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC18.95■□□□□ 0.62
USP54Q70EL1 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC18.95■□□□□ 0.62
USP54Q70EL1 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC18.95■□□□□ 0.62
USP54Q70EL1 RN7SKP155-201ENST00000516031 288 ntBASIC18.95■□□□□ 0.62
USP54Q70EL1 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC18.95■□□□□ 0.62
USP54Q70EL1 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC18.95■□□□□ 0.62
USP54Q70EL1 AC087203.1-201ENST00000532111 1181 ntBASIC18.95■□□□□ 0.62
USP54Q70EL1 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC18.95■□□□□ 0.62
USP54Q70EL1 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP54Q70EL1 AC010632.2-201ENST00000588369 1224 ntBASIC18.95■□□□□ 0.62
USP54Q70EL1 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC18.95■□□□□ 0.62
USP54Q70EL1 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP54Q70EL1 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP54Q70EL1 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
USP54Q70EL1 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP54Q70EL1 AC015802.1-201ENST00000588104 1449 ntBASIC18.94■□□□□ 0.62
USP54Q70EL1 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP54Q70EL1 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
USP54Q70EL1 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP54Q70EL1 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP54Q70EL1 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC18.94■□□□□ 0.62
USP54Q70EL1 KRT18P4-201ENST00000422599 1288 ntBASIC18.94■□□□□ 0.62
USP54Q70EL1 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC18.94■□□□□ 0.62
USP54Q70EL1 RN7SL582P-201ENST00000491078 279 ntBASIC18.94■□□□□ 0.62
USP54Q70EL1 EEF1GP8-201ENST00000506566 1154 ntBASIC18.94■□□□□ 0.62
USP54Q70EL1 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC18.94■□□□□ 0.62
USP54Q70EL1 AC132825.4-202ENST00000578792 434 ntBASIC18.94■□□□□ 0.62
USP54Q70EL1 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
USP54Q70EL1 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC18.94■□□□□ 0.62
USP54Q70EL1 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
USP54Q70EL1 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP54Q70EL1 PES1P2-201ENST00000449745 1735 ntBASIC18.94■□□□□ 0.62
USP54Q70EL1 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP54Q70EL1 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC18.93■□□□□ 0.62
USP54Q70EL1 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
USP54Q70EL1 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.93■□□□□ 0.62
USP54Q70EL1 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
USP54Q70EL1 PIFO-201ENST00000369737 746 ntTSL 2 BASIC18.93■□□□□ 0.62
USP54Q70EL1 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC18.93■□□□□ 0.62
USP54Q70EL1 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
USP54Q70EL1 TREHP1-201ENST00000531328 465 ntBASIC18.93■□□□□ 0.62
USP54Q70EL1 AC092862.1-201ENST00000541534 533 ntBASIC18.93■□□□□ 0.62
USP54Q70EL1 BATF-202ENST00000555504 361 ntTSL 2 BASIC18.93■□□□□ 0.62
USP54Q70EL1 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC18.93■□□□□ 0.62
USP54Q70EL1 CYP4F36P-201ENST00000589193 186 ntBASIC18.93■□□□□ 0.62
USP54Q70EL1 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC18.93■□□□□ 0.62
USP54Q70EL1 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC18.93■□□□□ 0.62
USP54Q70EL1 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC18.93■□□□□ 0.62
USP54Q70EL1 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms