Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMARCA1P28370 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SMARCA1P28370 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMARCA1P28370 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SMARCA1P28370 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.83■□□□□ 0.28
SMARCA1P28370 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC16.83■□□□□ 0.28
SMARCA1P28370 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMARCA1P28370 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
SMARCA1P28370 PGAM1P5-201ENST00000548011 764 ntBASIC16.83■□□□□ 0.28
SMARCA1P28370 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC16.83■□□□□ 0.28
SMARCA1P28370 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC16.83■□□□□ 0.28
SMARCA1P28370 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC16.83■□□□□ 0.28
SMARCA1P28370 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMARCA1P28370 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC16.83■□□□□ 0.28
SMARCA1P28370 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.83■□□□□ 0.28
SMARCA1P28370 DDX5-235ENST00000630471 473 ntTSL 4 BASIC16.83■□□□□ 0.28
SMARCA1P28370 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC16.83■□□□□ 0.28
SMARCA1P28370 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.83■□□□□ 0.28
SMARCA1P28370 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC16.83■□□□□ 0.28
SMARCA1P28370 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMARCA1P28370 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMARCA1P28370 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.83■□□□□ 0.28
SMARCA1P28370 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
SMARCA1P28370 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
SMARCA1P28370 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.83■□□□□ 0.28
SMARCA1P28370 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMARCA1P28370 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMARCA1P28370 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC16.82■□□□□ 0.28
SMARCA1P28370 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SMARCA1P28370 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SMARCA1P28370 RN7SKP214-201ENST00000364208 315 ntBASIC16.82■□□□□ 0.28
SMARCA1P28370 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC16.82■□□□□ 0.28
SMARCA1P28370 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 EIF4HP1-201ENST00000453115 687 ntBASIC16.82■□□□□ 0.28
SMARCA1P28370 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.82■□□□□ 0.28
SMARCA1P28370 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC16.82■□□□□ 0.28
SMARCA1P28370 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC16.82■□□□□ 0.28
SMARCA1P28370 GPR182-203ENST00000622922 591 ntBASIC16.82■□□□□ 0.28
SMARCA1P28370 AC090386.2-201ENST00000623010 1039 ntBASIC16.82■□□□□ 0.28
SMARCA1P28370 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SMARCA1P28370 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SMARCA1P28370 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC16.82■□□□□ 0.28
SMARCA1P28370 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMARCA1P28370 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.81■□□□□ 0.28
SMARCA1P28370 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
SMARCA1P28370 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SMARCA1P28370 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SMARCA1P28370 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.81■□□□□ 0.28
SMARCA1P28370 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.81■□□□□ 0.28
SMARCA1P28370 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
SMARCA1P28370 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC16.81■□□□□ 0.28
SMARCA1P28370 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.81■□□□□ 0.28
SMARCA1P28370 CALR4P-201ENST00000431943 946 ntBASIC16.81■□□□□ 0.28
SMARCA1P28370 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC16.81■□□□□ 0.28
SMARCA1P28370 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.81■□□□□ 0.28
SMARCA1P28370 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC16.81■□□□□ 0.28
SMARCA1P28370 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC16.81■□□□□ 0.28
SMARCA1P28370 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC16.81■□□□□ 0.28
SMARCA1P28370 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.81■□□□□ 0.28
SMARCA1P28370 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 AC026740.1-201ENST00000607068 791 ntBASIC16.81■□□□□ 0.28
SMARCA1P28370 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC16.81■□□□□ 0.28
SMARCA1P28370 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC16.81■□□□□ 0.28
SMARCA1P28370 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
SMARCA1P28370 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.81■□□□□ 0.28
SMARCA1P28370 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMARCA1P28370 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms