Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.5■□□□□ 0.23
MSH4O15457 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC16.5■□□□□ 0.23
MSH4O15457 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
MSH4O15457 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
MSH4O15457 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
MSH4O15457 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC16.5■□□□□ 0.23
MSH4O15457 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
MSH4O15457 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
MSH4O15457 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH4O15457 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.49■□□□□ 0.23
MSH4O15457 AC138028.6-201ENST00000616106 1482 ntBASIC16.49■□□□□ 0.23
MSH4O15457 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.49■□□□□ 0.23
MSH4O15457 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.49■□□□□ 0.23
MSH4O15457 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC16.49■□□□□ 0.23
MSH4O15457 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 GAS5-209ENST00000430245 723 ntTSL 3 BASIC16.49■□□□□ 0.23
MSH4O15457 FNTAP2-201ENST00000430308 634 ntBASIC16.49■□□□□ 0.23
MSH4O15457 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.49■□□□□ 0.23
MSH4O15457 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC16.49■□□□□ 0.23
MSH4O15457 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.49■□□□□ 0.23
MSH4O15457 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC16.49■□□□□ 0.23
MSH4O15457 HIST2H2BC-201ENST00000498492 580 ntBASIC16.49■□□□□ 0.23
MSH4O15457 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC16.49■□□□□ 0.23
MSH4O15457 MARK2P5-201ENST00000507649 634 ntBASIC16.49■□□□□ 0.23
MSH4O15457 AC022217.1-201ENST00000521069 738 ntBASIC16.49■□□□□ 0.23
MSH4O15457 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.49■□□□□ 0.23
MSH4O15457 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC16.49■□□□□ 0.23
MSH4O15457 SORD2P-201ENST00000558556 1069 ntBASIC16.49■□□□□ 0.23
MSH4O15457 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.49■□□□□ 0.23
MSH4O15457 AC020914.3-201ENST00000594712 304 ntBASIC16.49■□□□□ 0.23
MSH4O15457 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.49■□□□□ 0.23
MSH4O15457 AC138649.2-201ENST00000615886 705 ntBASIC16.49■□□□□ 0.23
MSH4O15457 AC244452.3-201ENST00000636814 210 ntBASIC16.49■□□□□ 0.23
MSH4O15457 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
MSH4O15457 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
MSH4O15457 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.49■□□□□ 0.23
MSH4O15457 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.49■□□□□ 0.23
MSH4O15457 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH4O15457 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC16.49■□□□□ 0.23
MSH4O15457 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
MSH4O15457 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.48■□□□□ 0.23
MSH4O15457 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
MSH4O15457 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH4O15457 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC16.48■□□□□ 0.23
MSH4O15457 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH4O15457 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
MSH4O15457 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.48■□□□□ 0.23
MSH4O15457 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH4O15457 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC16.48■□□□□ 0.23
MSH4O15457 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MSH4O15457 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
MSH4O15457 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC16.48■□□□□ 0.23
MSH4O15457 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
MSH4O15457 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
MSH4O15457 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.48■□□□□ 0.23
MSH4O15457 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.48■□□□□ 0.23
MSH4O15457 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH4O15457 EIF4HP1-201ENST00000453115 687 ntBASIC16.48■□□□□ 0.23
MSH4O15457 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.48■□□□□ 0.23
MSH4O15457 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.48■□□□□ 0.23
MSH4O15457 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC16.48■□□□□ 0.23
MSH4O15457 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.48■□□□□ 0.23
MSH4O15457 SCARNA20.5-201ENST00000516991 142 ntBASIC16.48■□□□□ 0.23
MSH4O15457 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH4O15457 FADS2-212ENST00000522639 360 ntTSL 5 BASIC16.48■□□□□ 0.23
MSH4O15457 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC16.48■□□□□ 0.23
MSH4O15457 AC009779.1-201ENST00000551138 283 ntBASIC16.48■□□□□ 0.23
MSH4O15457 FADS2-215ENST00000574708 385 ntTSL 3 BASIC16.48■□□□□ 0.23
MSH4O15457 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.48■□□□□ 0.23
MSH4O15457 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.48■□□□□ 0.23
MSH4O15457 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MSH4O15457 AL645939.5-201ENST00000606834 243 ntBASIC16.48■□□□□ 0.23
MSH4O15457 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.48■□□□□ 0.23
MSH4O15457 AC133540.1-201ENST00000620845 1019 ntBASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms