Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AGER-206ENST00000375070 1463 ntTSL 5 BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA2Q9Y261 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 RPS15-201ENST00000233609 534 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 COPE-202ENST00000349893 948 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 ACKR1-201ENST00000368121 1240 ntBASIC12.01□□□□□ -0.49
FOXA2Q9Y261 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 INE1-201ENST00000456273 945 ntBASIC12.01□□□□□ -0.49
FOXA2Q9Y261 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 PTP4A1P2-201ENST00000546033 454 ntBASIC12.01□□□□□ -0.49
FOXA2Q9Y261 RPS15-205ENST00000586686 562 ntTSL 5 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 RPS15-208ENST00000591804 711 ntTSL 5 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 AP005019.2-201ENST00000615104 511 ntBASIC12.01□□□□□ -0.49
FOXA2Q9Y261 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 AC090505.1-201ENST00000430515 1834 ntBASIC12.01□□□□□ -0.49
FOXA2Q9Y261 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 AC016397.2-201ENST00000624848 1985 ntBASIC12.01□□□□□ -0.49
FOXA2Q9Y261 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA2Q9Y261 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA2Q9Y261 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC12□□□□□ -0.49
FOXA2Q9Y261 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA2Q9Y261 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA2Q9Y261 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC12□□□□□ -0.49
FOXA2Q9Y261 SRC-202ENST00000373558 4304 ntTSL 5 BASIC12□□□□□ -0.49
FOXA2Q9Y261 CTBP1-AS2-206ENST00000581398 5652 ntBASIC12□□□□□ -0.49
FOXA2Q9Y261 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC12□□□□□ -0.49
FOXA2Q9Y261 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA2Q9Y261 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC12□□□□□ -0.49
FOXA2Q9Y261 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA2Q9Y261 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC12□□□□□ -0.49
FOXA2Q9Y261 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC12□□□□□ -0.49
FOXA2Q9Y261 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC12□□□□□ -0.49
FOXA2Q9Y261 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA2Q9Y261 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC12□□□□□ -0.49
FOXA2Q9Y261 INE2-201ENST00000630399 1874 ntBASIC12□□□□□ -0.49
FOXA2Q9Y261 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC12□□□□□ -0.49
FOXA2Q9Y261 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC12□□□□□ -0.49
FOXA2Q9Y261 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
FOXA2Q9Y261 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC12□□□□□ -0.49
FOXA2Q9Y261 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
FOXA2Q9Y261 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
FOXA2Q9Y261 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC12□□□□□ -0.49
FOXA2Q9Y261 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC12□□□□□ -0.49
FOXA2Q9Y261 PGGT1BP2-201ENST00000398621 1028 ntBASIC12□□□□□ -0.49
FOXA2Q9Y261 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC12□□□□□ -0.49
FOXA2Q9Y261 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
FOXA2Q9Y261 AC007969.1-201ENST00000433675 447 ntBASIC12□□□□□ -0.49
FOXA2Q9Y261 TTTY23B-201ENST00000442790 549 ntBASIC12□□□□□ -0.49
FOXA2Q9Y261 AC114812.1-204ENST00000449669 728 ntBASIC12□□□□□ -0.49
FOXA2Q9Y261 RN7SL837P-201ENST00000463010 287 ntBASIC12□□□□□ -0.49
FOXA2Q9Y261 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC12□□□□□ -0.49
FOXA2Q9Y261 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms