Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 CRCP-204ENST00000398684 492 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 HLA-DPB2-205ENST00000435074 1188 ntBASIC13.6□□□□□ -0.23
LRFN1Q9P244 AC011742.3-201ENST00000439053 820 ntBASIC13.6□□□□□ -0.23
LRFN1Q9P244 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 MIR4783-201ENST00000580343 82 ntBASIC13.6□□□□□ -0.23
LRFN1Q9P244 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 AC132192.2-201ENST00000596206 1147 ntBASIC13.6□□□□□ -0.23
LRFN1Q9P244 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 BX088702.1-201ENST00000610784 235 ntBASIC13.6□□□□□ -0.23
LRFN1Q9P244 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LRFN1Q9P244 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.6□□□□□ -0.23
LRFN1Q9P244 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LRFN1Q9P244 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LRFN1Q9P244 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LRFN1Q9P244 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 ZBED1P1-201ENST00000502364 1930 ntBASIC13.59□□□□□ -0.23
LRFN1Q9P244 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LRFN1Q9P244 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LRFN1Q9P244 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
LRFN1Q9P244 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LRFN1Q9P244 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LRFN1Q9P244 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LRFN1Q9P244 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 KRTAP19-9P-201ENST00000421795 191 ntBASIC13.59□□□□□ -0.23
LRFN1Q9P244 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 AC012441.2-201ENST00000444843 739 ntBASIC13.59□□□□□ -0.23
LRFN1Q9P244 AC104073.2-201ENST00000453737 312 ntBASIC13.59□□□□□ -0.23
LRFN1Q9P244 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 GCOM2-201ENST00000509133 1104 ntBASIC13.59□□□□□ -0.23
LRFN1Q9P244 AC131206.1-201ENST00000538078 1211 ntBASIC13.59□□□□□ -0.23
LRFN1Q9P244 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 AC005324.6-201ENST00000587972 613 ntBASIC13.59□□□□□ -0.23
LRFN1Q9P244 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 AC091544.8-201ENST00000619490 361 ntBASIC13.59□□□□□ -0.23
LRFN1Q9P244 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LRFN1Q9P244 ACE3P-201ENST00000423435 1973 ntBASIC13.59□□□□□ -0.23
LRFN1Q9P244 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LRFN1Q9P244 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LRFN1Q9P244 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
LRFN1Q9P244 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
LRFN1Q9P244 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms