Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 AL035414.1-201ENST00000451327 857 ntBASIC14.19□□□□□ -0.14
VPS13AQ96RL7 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 ALG1L7P-201ENST00000502317 768 ntBASIC14.19□□□□□ -0.14
VPS13AQ96RL7 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 AC103702.1-201ENST00000548801 2630 ntBASIC14.19□□□□□ -0.14
VPS13AQ96RL7 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 TREX1-203ENST00000456089 629 ntTSL 3 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 AC092910.2-201ENST00000491262 348 ntBASIC14.18□□□□□ -0.14
VPS13AQ96RL7 HINT1-205ENST00000508488 703 ntTSL 2 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 AC022447.5-201ENST00000504817 392 ntBASIC14.18□□□□□ -0.14
VPS13AQ96RL7 MIR2278-201ENST00000516344 96 ntBASIC14.18□□□□□ -0.14
VPS13AQ96RL7 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 SEPHS2P1-201ENST00000511618 1162 ntBASIC14.18□□□□□ -0.14
VPS13AQ96RL7 GGNBP1-204ENST00000613113 887 ntBASIC14.18□□□□□ -0.14
VPS13AQ96RL7 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VPS13AQ96RL7 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 PKD1P6-201ENST00000343738 4769 ntBASIC14.17□□□□□ -0.14
VPS13AQ96RL7 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 LILRP1-201ENST00000444199 1370 ntBASIC14.17□□□□□ -0.14
VPS13AQ96RL7 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 RN7SL523P-201ENST00000484401 298 ntBASIC14.17□□□□□ -0.14
VPS13AQ96RL7 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms