Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 AL133267.1-201ENST00000398220 340 ntBASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 RNA5SP412-201ENST00000516234 123 ntBASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 AL118558.3-201ENST00000607414 1079 ntBASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 ABR-228ENST00000574437 3196 ntTSL 5 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
PDLIM3Q53GG5 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 AC104581.4-201ENST00000623126 3052 ntBASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 R3HDM2P2-201ENST00000401880 2116 ntBASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 FAM21FP-201ENST00000426241 1131 ntBASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 SLED1-202ENST00000512051 380 ntBASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 PIGL-212ENST00000581006 554 ntTSL 4 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 AL589739.1-201ENST00000607720 493 ntBASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 AC015967.2-201ENST00000624092 234 ntBASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 AC006435.4-201ENST00000625037 234 ntBASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 AL356737.1-201ENST00000634391 234 ntBASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
PDLIM3Q53GG5 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC12.41□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms