Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
CHD9Q3L8U1 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.13■□□□□ 0.01
CHD9Q3L8U1 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 GPX3-202ENST00000517973 612 ntTSL 3 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 AC091304.3-201ENST00000566500 716 ntBASIC15.12■□□□□ 0.01
CHD9Q3L8U1 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 LAP3P2-201ENST00000454686 1454 ntBASIC15.12■□□□□ 0.01
CHD9Q3L8U1 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 AC092573.1-201ENST00000433054 884 ntBASIC15.12■□□□□ 0.01
CHD9Q3L8U1 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 RN7SL602P-201ENST00000578326 324 ntBASIC15.12■□□□□ 0.01
CHD9Q3L8U1 RN7SL718P-201ENST00000581254 303 ntBASIC15.12■□□□□ 0.01
CHD9Q3L8U1 RN7SL121P-201ENST00000584223 273 ntBASIC15.12■□□□□ 0.01
CHD9Q3L8U1 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC15.12■□□□□ 0.01
CHD9Q3L8U1 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 HNRNPA1P21-201ENST00000424115 961 ntBASIC15.11■□□□□ 0.01
CHD9Q3L8U1 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 AL133467.4-201ENST00000602953 725 ntBASIC15.11■□□□□ 0.01
CHD9Q3L8U1 AL359091.4-201ENST00000610052 409 ntBASIC15.11■□□□□ 0.01
CHD9Q3L8U1 AC113385.2-201ENST00000614465 762 ntBASIC15.11■□□□□ 0.01
CHD9Q3L8U1 AC126755.5-201ENST00000622756 267 ntBASIC15.11■□□□□ 0.01
CHD9Q3L8U1 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 OR7E115P-201ENST00000382617 1024 ntBASIC15.11■□□□□ 0.01
CHD9Q3L8U1 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 ASS1P2-201ENST00000439895 1223 ntBASIC15.11■□□□□ 0.01
CHD9Q3L8U1 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 AP005264.5-201ENST00000590066 467 ntBASIC15.11■□□□□ 0.01
CHD9Q3L8U1 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 AC008894.3-201ENST00000624324 3103 ntBASIC15.11■□□□□ 0.01
CHD9Q3L8U1 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CHD9Q3L8U1 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHD9Q3L8U1 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC15.1■□□□□ 0.01
CHD9Q3L8U1 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC15.1■□□□□ 0.01
CHD9Q3L8U1 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC15.1■□□□□ 0.01
CHD9Q3L8U1 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC15.1■□□□□ 0.01
CHD9Q3L8U1 EEF1DP7-201ENST00000580496 513 ntBASIC15.1■□□□□ 0.01
CHD9Q3L8U1 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms