Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC15.68■□□□□ 0.1
SOX4Q06945 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.68■□□□□ 0.1
SOX4Q06945 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX4Q06945 AC116345.2-201ENST00000512837 523 ntBASIC15.68■□□□□ 0.1
SOX4Q06945 AC134698.3-201ENST00000523880 214 ntBASIC15.68■□□□□ 0.1
SOX4Q06945 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX4Q06945 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX4Q06945 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX4Q06945 AL133499.1-201ENST00000596207 608 ntBASIC15.68■□□□□ 0.1
SOX4Q06945 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC15.68■□□□□ 0.1
SOX4Q06945 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SOX4Q06945 AC015967.2-201ENST00000624092 234 ntBASIC15.68■□□□□ 0.1
SOX4Q06945 AC006435.4-201ENST00000625037 234 ntBASIC15.68■□□□□ 0.1
SOX4Q06945 AL356737.1-201ENST00000634391 234 ntBASIC15.68■□□□□ 0.1
SOX4Q06945 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
SOX4Q06945 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX4Q06945 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX4Q06945 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX4Q06945 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SOX4Q06945 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX4Q06945 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX4Q06945 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX4Q06945 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SOX4Q06945 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SOX4Q06945 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX4Q06945 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX4Q06945 LINC01165-201ENST00000445190 1623 ntBASIC15.68■□□□□ 0.1
SOX4Q06945 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SOX4Q06945 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX4Q06945 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX4Q06945 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX4Q06945 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX4Q06945 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX4Q06945 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SOX4Q06945 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15.67■□□□□ 0.1
SOX4Q06945 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SOX4Q06945 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SOX4Q06945 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.67■□□□□ 0.1
SOX4Q06945 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.67■□□□□ 0.1
SOX4Q06945 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SOX4Q06945 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.67■□□□□ 0.1
SOX4Q06945 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
SOX4Q06945 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC15.67■□□□□ 0.1
SOX4Q06945 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.67■□□□□ 0.1
SOX4Q06945 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
SOX4Q06945 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
SOX4Q06945 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 PGAM1P5-201ENST00000548011 764 ntBASIC15.67■□□□□ 0.1
SOX4Q06945 AC027237.1-201ENST00000560942 655 ntBASIC15.67■□□□□ 0.1
SOX4Q06945 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC15.67■□□□□ 0.1
SOX4Q06945 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SOX4Q06945 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX4Q06945 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SOX4Q06945 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.67■□□□□ 0.1
SOX4Q06945 MYADML-201ENST00000474610 2147 ntBASIC15.67■□□□□ 0.1
SOX4Q06945 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX4Q06945 AC023824.1-201ENST00000562945 2975 ntBASIC15.66■□□□□ 0.1
SOX4Q06945 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX4Q06945 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX4Q06945 AGGF1P1-201ENST00000509500 2073 ntBASIC15.66■□□□□ 0.1
SOX4Q06945 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX4Q06945 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SOX4Q06945 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX4Q06945 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX4Q06945 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX4Q06945 AC239868.1-201ENST00000369385 493 ntBASIC15.66■□□□□ 0.1
SOX4Q06945 LBH-202ENST00000401506 485 ntTSL 3 BASIC15.66■□□□□ 0.1
SOX4Q06945 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX4Q06945 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC15.66■□□□□ 0.1
SOX4Q06945 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
SOX4Q06945 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC15.66■□□□□ 0.1
SOX4Q06945 NAT9-211ENST00000580632 799 ntTSL 3 BASIC15.66■□□□□ 0.1
SOX4Q06945 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX4Q06945 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX4Q06945 AL353770.1-201ENST00000614915 403 ntBASIC15.66■□□□□ 0.1
SOX4Q06945 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC15.66■□□□□ 0.1
SOX4Q06945 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX4Q06945 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX4Q06945 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX4Q06945 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX4Q06945 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX4Q06945 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX4Q06945 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX4Q06945 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SOX4Q06945 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms