Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 AC055811.4-201ENST00000624039 1754 ntBASIC12□□□□□ -0.49
CX3CL1P78423 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC12□□□□□ -0.49
CX3CL1P78423 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 AL035633.1-201ENST00000406139 838 ntBASIC12□□□□□ -0.49
CX3CL1P78423 AL512384.1-201ENST00000406683 331 ntBASIC12□□□□□ -0.49
CX3CL1P78423 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
CX3CL1P78423 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC12□□□□□ -0.49
CX3CL1P78423 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC12□□□□□ -0.49
CX3CL1P78423 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 COX20P2-201ENST00000452636 358 ntBASIC12□□□□□ -0.49
CX3CL1P78423 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC12□□□□□ -0.49
CX3CL1P78423 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 AC068587.3-201ENST00000526613 355 ntBASIC12□□□□□ -0.49
CX3CL1P78423 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC12□□□□□ -0.49
CX3CL1P78423 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 SRP9-204ENST00000619790 377 ntTSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 RPSAP52-203ENST00000622976 1023 ntBASIC12□□□□□ -0.49
CX3CL1P78423 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 AC105233.6-201ENST00000642093 218 ntBASIC12□□□□□ -0.49
CX3CL1P78423 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 AL359881.3-201ENST00000602640 1721 ntBASIC12□□□□□ -0.49
CX3CL1P78423 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC11.99□□□□□ -0.49
CX3CL1P78423 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
CX3CL1P78423 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
CX3CL1P78423 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC11.99□□□□□ -0.49
CX3CL1P78423 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC11.99□□□□□ -0.49
CX3CL1P78423 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC11.99□□□□□ -0.49
CX3CL1P78423 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC11.99□□□□□ -0.49
CX3CL1P78423 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
CX3CL1P78423 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
CX3CL1P78423 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC11.99□□□□□ -0.49
CX3CL1P78423 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC11.99□□□□□ -0.49
CX3CL1P78423 EIF3FP3-201ENST00000434851 1086 ntBASIC11.99□□□□□ -0.49
CX3CL1P78423 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC11.99□□□□□ -0.49
CX3CL1P78423 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CX3CL1P78423 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC11.99□□□□□ -0.49
CX3CL1P78423 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
CX3CL1P78423 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC11.99□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms