Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.61□□□□□ -0.39
USF1P22415 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC12.61□□□□□ -0.39
USF1P22415 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
USF1P22415 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
USF1P22415 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 PARN-202ENST00000420015 2360 ntTSL 2 BASIC12.61□□□□□ -0.39
USF1P22415 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
USF1P22415 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC12.61□□□□□ -0.39
USF1P22415 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC12.61□□□□□ -0.39
USF1P22415 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
USF1P22415 AL136309.1-201ENST00000403917 691 ntBASIC12.61□□□□□ -0.39
USF1P22415 DEF8-202ENST00000418391 852 ntTSL 2 BASIC12.61□□□□□ -0.39
USF1P22415 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 AC005740.2-201ENST00000511085 419 ntBASIC12.61□□□□□ -0.39
USF1P22415 AC044849.1-201ENST00000519737 1188 ntBASIC12.61□□□□□ -0.39
USF1P22415 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC12.61□□□□□ -0.39
USF1P22415 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
USF1P22415 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC12.61□□□□□ -0.39
USF1P22415 MIR3619-201ENST00000579667 83 ntBASIC12.61□□□□□ -0.39
USF1P22415 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC12.61□□□□□ -0.39
USF1P22415 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC12.61□□□□□ -0.39
USF1P22415 HCG18-245ENST00000602550 559 ntTSL 4 BASIC12.61□□□□□ -0.39
USF1P22415 AL023803.2-201ENST00000620080 638 ntBASIC12.61□□□□□ -0.39
USF1P22415 AP001002.3-201ENST00000623482 206 ntBASIC12.61□□□□□ -0.39
USF1P22415 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC12.61□□□□□ -0.39
USF1P22415 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC12.61□□□□□ -0.39
USF1P22415 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC12.61□□□□□ -0.39
USF1P22415 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC12.61□□□□□ -0.39
USF1P22415 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.61□□□□□ -0.39
USF1P22415 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
USF1P22415 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
USF1P22415 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
USF1P22415 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.61□□□□□ -0.39
USF1P22415 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC12.61□□□□□ -0.39
USF1P22415 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC12.6□□□□□ -0.39
USF1P22415 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
USF1P22415 SNX18-202ENST00000343017 3140 ntBASIC12.6□□□□□ -0.39
USF1P22415 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC12.6□□□□□ -0.39
USF1P22415 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.6□□□□□ -0.39
USF1P22415 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC12.6□□□□□ -0.39
USF1P22415 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC12.6□□□□□ -0.39
USF1P22415 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC12.6□□□□□ -0.39
USF1P22415 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.6□□□□□ -0.39
USF1P22415 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC12.6□□□□□ -0.39
USF1P22415 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 NKAIN1P1-201ENST00000435754 582 ntBASIC12.6□□□□□ -0.39
USF1P22415 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC12.6□□□□□ -0.39
USF1P22415 Z97180.1-201ENST00000445173 988 ntBASIC12.6□□□□□ -0.39
USF1P22415 HIST2H2BB-201ENST00000449108 381 ntBASIC12.6□□□□□ -0.39
USF1P22415 RN7SL769P-201ENST00000469386 295 ntBASIC12.6□□□□□ -0.39
USF1P22415 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC12.6□□□□□ -0.39
USF1P22415 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC12.6□□□□□ -0.39
USF1P22415 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC12.6□□□□□ -0.39
USF1P22415 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC12.6□□□□□ -0.39
USF1P22415 AC106820.3-201ENST00000561653 397 ntBASIC12.6□□□□□ -0.39
USF1P22415 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
USF1P22415 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC12.6□□□□□ -0.39
USF1P22415 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
USF1P22415 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
USF1P22415 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
USF1P22415 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
USF1P22415 STRN-202ENST00000379213 2254 ntTSL 5 BASIC12.6□□□□□ -0.39
USF1P22415 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms