Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC19.11■□□□□ 0.65
COL3A1P02461 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC19.11■□□□□ 0.65
COL3A1P02461 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC19.11■□□□□ 0.65
COL3A1P02461 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL3A1P02461 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL3A1P02461 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC19.11■□□□□ 0.65
COL3A1P02461 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL3A1P02461 FAM90A2P-201ENST00000511144 1395 ntBASIC19.11■□□□□ 0.65
COL3A1P02461 FAM90A25P-201ENST00000528404 1395 ntBASIC19.11■□□□□ 0.65
COL3A1P02461 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL3A1P02461 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL3A1P02461 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL3A1P02461 SHMT1P1-201ENST00000419974 1312 ntBASIC19.11■□□□□ 0.65
COL3A1P02461 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL3A1P02461 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
COL3A1P02461 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC19.1■□□□□ 0.65
COL3A1P02461 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
COL3A1P02461 RN7SL530P-201ENST00000485097 298 ntBASIC19.1■□□□□ 0.65
COL3A1P02461 AC019193.1-201ENST00000506678 823 ntBASIC19.1■□□□□ 0.65
COL3A1P02461 AC140658.4-201ENST00000561990 352 ntBASIC19.1■□□□□ 0.65
COL3A1P02461 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC19.1■□□□□ 0.65
COL3A1P02461 NAT9-220ENST00000582870 896 ntTSL 5 BASIC19.1■□□□□ 0.65
COL3A1P02461 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC19.1■□□□□ 0.65
COL3A1P02461 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC19.1■□□□□ 0.65
COL3A1P02461 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC19.1■□□□□ 0.65
COL3A1P02461 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC19.1■□□□□ 0.65
COL3A1P02461 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC19.1■□□□□ 0.65
COL3A1P02461 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC19.1■□□□□ 0.65
COL3A1P02461 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL3A1P02461 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC19.1■□□□□ 0.65
COL3A1P02461 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC19.1■□□□□ 0.65
COL3A1P02461 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
COL3A1P02461 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 AL583805.1-201ENST00000391389 531 ntBASIC19.09■□□□□ 0.65
COL3A1P02461 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC19.09■□□□□ 0.65
COL3A1P02461 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC19.09■□□□□ 0.65
COL3A1P02461 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC19.09■□□□□ 0.65
COL3A1P02461 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC19.09■□□□□ 0.65
COL3A1P02461 AC079328.1-201ENST00000560358 952 ntBASIC19.09■□□□□ 0.65
COL3A1P02461 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC19.09■□□□□ 0.65
COL3A1P02461 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC19.09■□□□□ 0.65
COL3A1P02461 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC19.09■□□□□ 0.65
COL3A1P02461 LINC01783-202ENST00000614408 828 ntBASIC19.09■□□□□ 0.65
COL3A1P02461 MIR6769A-201ENST00000617340 73 ntBASIC19.09■□□□□ 0.65
COL3A1P02461 BX284668.2-205ENST00000619677 828 ntBASIC19.09■□□□□ 0.65
COL3A1P02461 AC051619.9-201ENST00000623237 597 ntBASIC19.09■□□□□ 0.65
COL3A1P02461 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
COL3A1P02461 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
COL3A1P02461 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 AC152010.1-201ENST00000415779 2006 ntBASIC19.09■□□□□ 0.65
COL3A1P02461 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.09■□□□□ 0.65
COL3A1P02461 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
COL3A1P02461 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC19.09■□□□□ 0.65
COL3A1P02461 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC19.09■□□□□ 0.65
COL3A1P02461 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC19.09■□□□□ 0.65
COL3A1P02461 HSPA7-201ENST00000445535 1927 ntBASIC19.09■□□□□ 0.65
COL3A1P02461 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC19.09■□□□□ 0.65
COL3A1P02461 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC19.09■□□□□ 0.65
COL3A1P02461 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
COL3A1P02461 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 USP17L6P-201ENST00000382470 1197 ntBASIC19.09■□□□□ 0.65
COL3A1P02461 MPV17-204ENST00000399052 749 ntTSL 4 BASIC19.09■□□□□ 0.65
COL3A1P02461 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC19.09■□□□□ 0.65
COL3A1P02461 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC19.09■□□□□ 0.65
COL3A1P02461 IGLV3-15-201ENST00000518356 244 ntBASIC19.09■□□□□ 0.65
COL3A1P02461 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC19.09■□□□□ 0.65
COL3A1P02461 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC19.09■□□□□ 0.65
COL3A1P02461 MIR4522-201ENST00000584932 87 ntBASIC19.09■□□□□ 0.65
COL3A1P02461 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC19.09■□□□□ 0.65
COL3A1P02461 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
COL3A1P02461 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
COL3A1P02461 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC19.09■□□□□ 0.65
COL3A1P02461 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL3A1P02461 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL3A1P02461 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
COL3A1P02461 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms