Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 TNN-203ENST00000622870 3719 ntTSL 5 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 CHMP1AP1-201ENST00000445563 662 ntBASIC15.82■□□□□ 0.12
SIX2Q9NPC8 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 CROCCP4-201ENST00000457096 498 ntBASIC15.82■□□□□ 0.12
SIX2Q9NPC8 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 AL136309.1-201ENST00000403917 691 ntBASIC15.81■□□□□ 0.12
SIX2Q9NPC8 MIR1202-201ENST00000408529 83 ntBASIC15.81■□□□□ 0.12
SIX2Q9NPC8 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 AL354989.2-201ENST00000435838 1540 ntBASIC15.81■□□□□ 0.12
SIX2Q9NPC8 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 AC027237.1-201ENST00000560942 655 ntBASIC15.81■□□□□ 0.12
SIX2Q9NPC8 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 DDC-213ENST00000617822 1809 ntTSL 3 BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 AL358472.5-202ENST00000641448 1267 ntBASIC15.81■□□□□ 0.12
SIX2Q9NPC8 AC105233.6-201ENST00000642093 218 ntBASIC15.81■□□□□ 0.12
SIX2Q9NPC8 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SIX2Q9NPC8 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AC090643.2-201ENST00000623442 2029 ntBASIC15.8■□□□□ 0.12
SIX2Q9NPC8 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SIX2Q9NPC8 AL359881.3-201ENST00000602640 1721 ntBASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms