Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.33■□□□□ 0.05
PCDH9Q9HC56 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 AC010327.5-201ENST00000586923 3061 ntBASIC15.33■□□□□ 0.04
PCDH9Q9HC56 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PCDH9Q9HC56 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 TMEM14DP-201ENST00000422205 345 ntBASIC15.32■□□□□ 0.04
PCDH9Q9HC56 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 AC008735.3-201ENST00000596646 500 ntBASIC15.32■□□□□ 0.04
PCDH9Q9HC56 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 AL136172.1-201ENST00000598590 1394 ntBASIC15.32■□□□□ 0.04
PCDH9Q9HC56 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 AC020910.6-201ENST00000623084 1459 ntBASIC15.32■□□□□ 0.04
PCDH9Q9HC56 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 SBF1P1-201ENST00000444527 5631 ntBASIC15.32■□□□□ 0.04
PCDH9Q9HC56 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 AL365209.1-201ENST00000624418 6473 ntBASIC15.32■□□□□ 0.04
PCDH9Q9HC56 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 WARS-203ENST00000358655 2466 ntTSL 2 BASIC15.32■□□□□ 0.04
PCDH9Q9HC56 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms