Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC13.19□□□□□ -0.3
MMP28Q9H239 AC093512.1-201ENST00000617969 520 ntBASIC13.19□□□□□ -0.3
MMP28Q9H239 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC13.19□□□□□ -0.3
MMP28Q9H239 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC13.19□□□□□ -0.3
MMP28Q9H239 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC13.19□□□□□ -0.3
MMP28Q9H239 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.19□□□□□ -0.3
MMP28Q9H239 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.19□□□□□ -0.3
MMP28Q9H239 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
MMP28Q9H239 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
MMP28Q9H239 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC13.19□□□□□ -0.3
MMP28Q9H239 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC13.19□□□□□ -0.3
MMP28Q9H239 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC13.19□□□□□ -0.3
MMP28Q9H239 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC13.19□□□□□ -0.3
MMP28Q9H239 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.19□□□□□ -0.3
MMP28Q9H239 INE2-201ENST00000630399 1874 ntBASIC13.19□□□□□ -0.3
MMP28Q9H239 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
MMP28Q9H239 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
MMP28Q9H239 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
MMP28Q9H239 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC13.18□□□□□ -0.3
MMP28Q9H239 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC13.18□□□□□ -0.3
MMP28Q9H239 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
MMP28Q9H239 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC13.18□□□□□ -0.3
MMP28Q9H239 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC13.18□□□□□ -0.3
MMP28Q9H239 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
MMP28Q9H239 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC13.18□□□□□ -0.3
MMP28Q9H239 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 AC004945.1-201ENST00000416738 983 ntBASIC13.18□□□□□ -0.3
MMP28Q9H239 FAM58DP-201ENST00000428076 619 ntBASIC13.18□□□□□ -0.3
MMP28Q9H239 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC13.18□□□□□ -0.3
MMP28Q9H239 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC13.18□□□□□ -0.3
MMP28Q9H239 RBPMS2P1-201ENST00000437762 623 ntBASIC13.18□□□□□ -0.3
MMP28Q9H239 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC13.18□□□□□ -0.3
MMP28Q9H239 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC13.18□□□□□ -0.3
MMP28Q9H239 MAX-210ENST00000555419 765 ntTSL 5 BASIC13.18□□□□□ -0.3
MMP28Q9H239 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC13.18□□□□□ -0.3
MMP28Q9H239 LSM12-202ENST00000585388 942 ntTSL 3 BASIC13.18□□□□□ -0.3
MMP28Q9H239 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC13.18□□□□□ -0.3
MMP28Q9H239 AC026979.3-201ENST00000607315 403 ntBASIC13.18□□□□□ -0.3
MMP28Q9H239 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC13.18□□□□□ -0.3
MMP28Q9H239 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
MMP28Q9H239 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
MMP28Q9H239 AC084364.1-201ENST00000551967 1556 ntBASIC13.18□□□□□ -0.3
MMP28Q9H239 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC13.18□□□□□ -0.3
MMP28Q9H239 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC13.18□□□□□ -0.3
MMP28Q9H239 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
MMP28Q9H239 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
MMP28Q9H239 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
MMP28Q9H239 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
MMP28Q9H239 PEG13-201ENST00000631594 5667 ntBASIC13.18□□□□□ -0.3
MMP28Q9H239 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
MMP28Q9H239 CROT-203ENST00000419147 2959 ntTSL 2 BASIC13.17□□□□□ -0.3
MMP28Q9H239 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC13.17□□□□□ -0.3
MMP28Q9H239 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC13.17□□□□□ -0.3
MMP28Q9H239 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
MMP28Q9H239 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
MMP28Q9H239 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
MMP28Q9H239 AC111170.3-201ENST00000624282 2464 ntBASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms