Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
IFT140Q96RY7 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
IFT140Q96RY7 U3.5-201ENST00000363448 216 ntBASIC23.58■■□□□ 1.37
IFT140Q96RY7 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
IFT140Q96RY7 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
IFT140Q96RY7 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC23.58■■□□□ 1.37
IFT140Q96RY7 AC092810.2-201ENST00000431570 362 ntBASIC23.58■■□□□ 1.37
IFT140Q96RY7 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
IFT140Q96RY7 VDAC1P11-201ENST00000458323 852 ntBASIC23.58■■□□□ 1.37
IFT140Q96RY7 RPSAP70-201ENST00000504462 864 ntBASIC23.58■■□□□ 1.37
IFT140Q96RY7 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC23.58■■□□□ 1.37
IFT140Q96RY7 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC23.58■■□□□ 1.37
IFT140Q96RY7 GRAMD4P6-201ENST00000556999 244 ntBASIC23.58■■□□□ 1.37
IFT140Q96RY7 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC23.58■■□□□ 1.37
IFT140Q96RY7 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC23.58■■□□□ 1.37
IFT140Q96RY7 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC23.58■■□□□ 1.37
IFT140Q96RY7 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC23.58■■□□□ 1.37
IFT140Q96RY7 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
IFT140Q96RY7 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
IFT140Q96RY7 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
IFT140Q96RY7 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
IFT140Q96RY7 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
IFT140Q96RY7 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
IFT140Q96RY7 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
IFT140Q96RY7 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
IFT140Q96RY7 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
IFT140Q96RY7 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
IFT140Q96RY7 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
IFT140Q96RY7 NKILA-202ENST00000614771 2598 ntBASIC23.57■■□□□ 1.36
IFT140Q96RY7 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
IFT140Q96RY7 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
IFT140Q96RY7 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
IFT140Q96RY7 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
IFT140Q96RY7 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 HNRNPA1P10-201ENST00000444945 962 ntBASIC23.57■■□□□ 1.36
IFT140Q96RY7 AL136084.1-201ENST00000449172 318 ntBASIC23.57■■□□□ 1.36
IFT140Q96RY7 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
IFT140Q96RY7 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 SORD2P-201ENST00000558556 1069 ntBASIC23.57■■□□□ 1.36
IFT140Q96RY7 AP001462.1-201ENST00000594089 452 ntBASIC23.57■■□□□ 1.36
IFT140Q96RY7 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 AL450487.2-201ENST00000615934 407 ntBASIC23.57■■□□□ 1.36
IFT140Q96RY7 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 PCDH8P1-201ENST00000428983 2773 ntBASIC23.57■■□□□ 1.36
IFT140Q96RY7 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
IFT140Q96RY7 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
IFT140Q96RY7 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
IFT140Q96RY7 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC23.57■■□□□ 1.36
IFT140Q96RY7 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
IFT140Q96RY7 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 KRT18P33-201ENST00000398525 1043 ntBASIC23.56■■□□□ 1.36
IFT140Q96RY7 RPL10-203ENST00000406022 748 ntTSL 3 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 ISL1-203ENST00000511384 981 ntTSL 5 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 MBP-230ENST00000528160 584 ntTSL 5 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 AC132825.4-202ENST00000578792 434 ntBASIC23.56■■□□□ 1.36
IFT140Q96RY7 AC132812.1-201ENST00000583145 892 ntBASIC23.56■■□□□ 1.36
IFT140Q96RY7 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 FZD10-202ENST00000539839 3282 ntBASIC23.56■■□□□ 1.36
IFT140Q96RY7 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
IFT140Q96RY7 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC23.56■■□□□ 1.36
IFT140Q96RY7 GH1-203ENST00000351388 685 ntTSL 2 BASIC23.56■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms