Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
VPS13AQ96RL7 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.21□□□□□ -0.13
VPS13AQ96RL7 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.21□□□□□ -0.13
VPS13AQ96RL7 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 AL357143.1-203ENST00000639750 881 ntBASIC14.21□□□□□ -0.13
VPS13AQ96RL7 AC117503.4-201ENST00000623229 1418 ntBASIC14.21□□□□□ -0.13
VPS13AQ96RL7 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VPS13AQ96RL7 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
VPS13AQ96RL7 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
VPS13AQ96RL7 OR52M2P-201ENST00000414298 959 ntBASIC14.21□□□□□ -0.14
VPS13AQ96RL7 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC14.21□□□□□ -0.14
VPS13AQ96RL7 MIR4254-201ENST00000581063 76 ntBASIC14.21□□□□□ -0.14
VPS13AQ96RL7 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC14.21□□□□□ -0.14
VPS13AQ96RL7 AL591424.3-201ENST00000614278 872 ntBASIC14.21□□□□□ -0.14
VPS13AQ96RL7 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
VPS13AQ96RL7 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
VPS13AQ96RL7 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.21□□□□□ -0.14
VPS13AQ96RL7 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
VPS13AQ96RL7 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.21□□□□□ -0.14
VPS13AQ96RL7 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC14.21□□□□□ -0.14
VPS13AQ96RL7 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
VPS13AQ96RL7 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
VPS13AQ96RL7 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 AL080243.1-201ENST00000423293 1060 ntBASIC14.2□□□□□ -0.14
VPS13AQ96RL7 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 C18orf15-201ENST00000623680 2534 ntBASIC14.2□□□□□ -0.14
VPS13AQ96RL7 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 URB1-AS1-201ENST00000534991 831 ntBASIC14.2□□□□□ -0.14
VPS13AQ96RL7 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 RN7SL440P-201ENST00000577855 343 ntBASIC14.2□□□□□ -0.14
VPS13AQ96RL7 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.2□□□□□ -0.14
VPS13AQ96RL7 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 RN7SL128P-201ENST00000467883 305 ntBASIC14.19□□□□□ -0.14
VPS13AQ96RL7 AC095040.1-201ENST00000513286 675 ntBASIC14.19□□□□□ -0.14
VPS13AQ96RL7 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 NT5C-204ENST00000578337 582 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 NAT9-219ENST00000582524 573 ntTSL 4 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
VPS13AQ96RL7 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms