Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 MPV17-206ENST00000402722 827 ntTSL 3 BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 AL136309.1-201ENST00000403917 691 ntBASIC11.47□□□□□ -0.57
CCDC140Q96MF4 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 KLF2P4-201ENST00000451959 1225 ntBASIC11.47□□□□□ -0.57
CCDC140Q96MF4 CTBP2P5-201ENST00000454986 1264 ntBASIC11.47□□□□□ -0.57
CCDC140Q96MF4 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 PFN2-215ENST00000497148 743 ntTSL 4 BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 RAB43P1-201ENST00000561790 589 ntBASIC11.47□□□□□ -0.57
CCDC140Q96MF4 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 RPS24-214ENST00000613865 538 ntTSL 5 BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CCDC140Q96MF4 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 RDX-218ENST00000544551 4117 ntTSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 KRT8P4-201ENST00000509735 1454 ntBASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AC006504.5-208ENST00000588784 2401 ntBASIC11.46□□□□□ -0.57
CCDC140Q96MF4 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AC063926.2-201ENST00000623766 1308 ntBASIC11.46□□□□□ -0.57
CCDC140Q96MF4 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AL117339.1-201ENST00000419779 428 ntTSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 RGS5-214ENST00000429865 754 ntTSL 3 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 SNX29P1-201ENST00000548357 1007 ntBASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AC103988.2-201ENST00000561804 725 ntBASIC11.46□□□□□ -0.57
CCDC140Q96MF4 C2orf69P2-201ENST00000562032 1123 ntBASIC11.46□□□□□ -0.57
CCDC140Q96MF4 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AP001442.1-203ENST00000596385 876 ntTSL 5 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
CCDC140Q96MF4 UCKL1-AS1-201ENST00000623569 3602 ntBASIC11.46□□□□□ -0.58
CCDC140Q96MF4 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC11.46□□□□□ -0.58
CCDC140Q96MF4 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
CCDC140Q96MF4 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CCDC140Q96MF4 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CCDC140Q96MF4 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CCDC140Q96MF4 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC11.46□□□□□ -0.58
CCDC140Q96MF4 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CCDC140Q96MF4 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms