Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 AC067750.1-201ENST00000608826 6545 ntBASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 FO681548.1-201ENST00000455617 1132 ntBASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 AL132655.2-201ENST00000596276 594 ntBASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 ARHGAP23P1-201ENST00000562773 1937 ntBASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 AC215219.1-201ENST00000400706 1817 ntBASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 AL359881.3-201ENST00000602640 1721 ntBASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 AC020910.6-201ENST00000623084 1459 ntBASIC15.4■□□□□ 0.06
ATG4AQ8WYN0 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
ATG4AQ8WYN0 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
ATG4AQ8WYN0 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 WARS-203ENST00000358655 2466 ntTSL 2 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 DFFBP1-201ENST00000433250 979 ntBASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 INGX-202ENST00000489074 768 ntBASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 CLUHP6-201ENST00000580789 941 ntBASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 AP005019.2-201ENST00000615104 511 ntBASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 AC015688.4-201ENST00000580780 1647 ntBASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.39■□□□□ 0.05
ATG4AQ8WYN0 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms