Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 WDR7-208ENST00000589935 544 ntTSL 4 BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 BX088702.1-201ENST00000610784 235 ntBASIC14.83□□□□□ -0.04
HMGB4Q8WW32 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 AC013726.1-201ENST00000563747 2285 ntBASIC14.83□□□□□ -0.04
HMGB4Q8WW32 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 FRMPD2B-201ENST00000431305 1347 ntBASIC14.83□□□□□ -0.04
HMGB4Q8WW32 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 FAM90A2P-201ENST00000511144 1395 ntBASIC14.83□□□□□ -0.04
HMGB4Q8WW32 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 FAM90A25P-201ENST00000528404 1395 ntBASIC14.83□□□□□ -0.04
HMGB4Q8WW32 CAP2P1-201ENST00000557743 1390 ntBASIC14.83□□□□□ -0.04
HMGB4Q8WW32 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HMGB4Q8WW32 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 AL645933.1-201ENST00000440087 609 ntBASIC14.82□□□□□ -0.04
HMGB4Q8WW32 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 RBM8B-201ENST00000555532 525 ntBASIC14.82□□□□□ -0.04
HMGB4Q8WW32 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 AC011491.1-203ENST00000637688 543 ntBASIC14.82□□□□□ -0.04
HMGB4Q8WW32 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 AC112693.3-201ENST00000624819 1983 ntBASIC14.82□□□□□ -0.04
HMGB4Q8WW32 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HMGB4Q8WW32 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
HMGB4Q8WW32 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
HMGB4Q8WW32 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB4Q8WW32 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB4Q8WW32 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.81□□□□□ -0.04
HMGB4Q8WW32 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB4Q8WW32 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB4Q8WW32 AC136621.1-201ENST00000624017 2304 ntBASIC14.81□□□□□ -0.04
HMGB4Q8WW32 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HMGB4Q8WW32 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HMGB4Q8WW32 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms