Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
CX3CL1P78423 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC12.02□□□□□ -0.49
CX3CL1P78423 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CX3CL1P78423 AL603764.1-201ENST00000636452 321 ntBASIC12.02□□□□□ -0.49
CX3CL1P78423 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
CX3CL1P78423 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC12.02□□□□□ -0.49
CX3CL1P78423 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CX3CL1P78423 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CX3CL1P78423 AC134312.5-201ENST00000568031 1313 ntBASIC12.02□□□□□ -0.49
CX3CL1P78423 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.02□□□□□ -0.49
CX3CL1P78423 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.02□□□□□ -0.49
CX3CL1P78423 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CX3CL1P78423 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CX3CL1P78423 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC12.02□□□□□ -0.49
CX3CL1P78423 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC12.02□□□□□ -0.49
CX3CL1P78423 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
CX3CL1P78423 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CX3CL1P78423 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC12.02□□□□□ -0.49
CX3CL1P78423 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CX3CL1P78423 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CX3CL1P78423 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CX3CL1P78423 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC12.02□□□□□ -0.49
CX3CL1P78423 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CX3CL1P78423 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CX3CL1P78423 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CX3CL1P78423 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
CX3CL1P78423 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CX3CL1P78423 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC12.02□□□□□ -0.49
CX3CL1P78423 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
CX3CL1P78423 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC12.02□□□□□ -0.49
CX3CL1P78423 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
CX3CL1P78423 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
CX3CL1P78423 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC12.01□□□□□ -0.49
CX3CL1P78423 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 EDF1-203ENST00000371649 790 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC12.01□□□□□ -0.49
CX3CL1P78423 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC12.01□□□□□ -0.49
CX3CL1P78423 AC012441.1-201ENST00000446669 685 ntBASIC12.01□□□□□ -0.49
CX3CL1P78423 AC007389.4-201ENST00000454674 793 ntBASIC12.01□□□□□ -0.49
CX3CL1P78423 INE1-201ENST00000456273 945 ntBASIC12.01□□□□□ -0.49
CX3CL1P78423 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC12.01□□□□□ -0.49
CX3CL1P78423 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 MIR5189-201ENST00000577370 114 ntBASIC12.01□□□□□ -0.49
CX3CL1P78423 RPS15-202ENST00000585665 467 ntTSL 3 BASIC12.01□□□□□ -0.49
CX3CL1P78423 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC12.01□□□□□ -0.49
CX3CL1P78423 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC12.01□□□□□ -0.49
CX3CL1P78423 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 CU639417.3-201ENST00000624240 1404 ntBASIC12.01□□□□□ -0.49
CX3CL1P78423 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC12.01□□□□□ -0.49
CX3CL1P78423 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CX3CL1P78423 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
CX3CL1P78423 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 MSTO2P-201ENST00000314835 1709 ntBASIC12□□□□□ -0.49
CX3CL1P78423 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
CX3CL1P78423 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CX3CL1P78423 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC12□□□□□ -0.49
CX3CL1P78423 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms