Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 MPRIPP1-201ENST00000452433 1089 ntBASIC12.05□□□□□ -0.48
LMO4P61968 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 RHEB-207ENST00000496004 744 ntTSL 2 BASIC12.05□□□□□ -0.48
LMO4P61968 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC12.05□□□□□ -0.48
LMO4P61968 NEU3-205ENST00000531619 582 ntTSL 5 BASIC12.05□□□□□ -0.48
LMO4P61968 CFL1-214ENST00000534769 758 ntTSL 2 BASIC12.05□□□□□ -0.48
LMO4P61968 AC027237.1-201ENST00000560942 655 ntBASIC12.05□□□□□ -0.48
LMO4P61968 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC12.05□□□□□ -0.48
LMO4P61968 AC124068.2-201ENST00000569473 1109 ntBASIC12.05□□□□□ -0.48
LMO4P61968 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC12.05□□□□□ -0.48
LMO4P61968 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC12.05□□□□□ -0.48
LMO4P61968 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC12.05□□□□□ -0.48
LMO4P61968 AC007718.1-201ENST00000621078 280 ntBASIC12.05□□□□□ -0.48
LMO4P61968 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC12.05□□□□□ -0.48
LMO4P61968 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC12.05□□□□□ -0.48
LMO4P61968 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
LMO4P61968 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC12.05□□□□□ -0.48
LMO4P61968 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC12.05□□□□□ -0.48
LMO4P61968 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
LMO4P61968 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC12.05□□□□□ -0.48
LMO4P61968 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
LMO4P61968 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
LMO4P61968 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LMO4P61968 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
LMO4P61968 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC12.05□□□□□ -0.48
LMO4P61968 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC12.05□□□□□ -0.48
LMO4P61968 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 RNA5SP359-201ENST00000364838 113 ntBASIC12.04□□□□□ -0.48
LMO4P61968 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 BANF1P3-201ENST00000412556 261 ntBASIC12.04□□□□□ -0.48
LMO4P61968 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC12.04□□□□□ -0.48
LMO4P61968 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC12.04□□□□□ -0.48
LMO4P61968 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC12.04□□□□□ -0.48
LMO4P61968 LY6E-208ENST00000520531 490 ntTSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC12.04□□□□□ -0.48
LMO4P61968 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC12.04□□□□□ -0.48
LMO4P61968 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC12.04□□□□□ -0.48
LMO4P61968 MIR3677-201ENST00000578964 60 ntBASIC12.04□□□□□ -0.48
LMO4P61968 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 AC051619.9-201ENST00000623237 597 ntBASIC12.04□□□□□ -0.48
LMO4P61968 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC12.04□□□□□ -0.48
LMO4P61968 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
LMO4P61968 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
LMO4P61968 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC12.04□□□□□ -0.48
LMO4P61968 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms