Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
RFX1P22670 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RFX1P22670 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX1P22670 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
RFX1P22670 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.18■□□□□ 0.18
RFX1P22670 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
RFX1P22670 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 RAB5A-203ENST00000422242 1443 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RFX1P22670 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX1P22670 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX1P22670 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.17■□□□□ 0.18
RFX1P22670 TP73-201ENST00000346387 4854 ntTSL 5 BASIC16.17■□□□□ 0.18
RFX1P22670 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
RFX1P22670 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
RFX1P22670 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX1P22670 INTS4P1-203ENST00000641008 3683 ntBASIC16.17■□□□□ 0.18
RFX1P22670 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
RFX1P22670 BTBD6P1-201ENST00000412176 1267 ntBASIC16.17■□□□□ 0.18
RFX1P22670 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.17■□□□□ 0.18
RFX1P22670 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX1P22670 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX1P22670 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
RFX1P22670 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.17■□□□□ 0.18
RFX1P22670 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.17■□□□□ 0.18
RFX1P22670 DUX4L45-201ENST00000566406 1057 ntBASIC16.17■□□□□ 0.18
RFX1P22670 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC16.17■□□□□ 0.18
RFX1P22670 CLUHP6-201ENST00000580789 941 ntBASIC16.17■□□□□ 0.18
RFX1P22670 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC16.17■□□□□ 0.18
RFX1P22670 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.17■□□□□ 0.18
RFX1P22670 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16.17■□□□□ 0.18
RFX1P22670 AC008687.7-202ENST00000637404 953 ntBASIC16.17■□□□□ 0.18
RFX1P22670 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
RFX1P22670 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
RFX1P22670 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
RFX1P22670 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
RFX1P22670 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 AGGF1P1-201ENST00000509500 2073 ntBASIC16.17■□□□□ 0.18
RFX1P22670 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.17■□□□□ 0.18
RFX1P22670 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFX1P22670 KRT8P35-201ENST00000483942 1338 ntBASIC16.17■□□□□ 0.18
RFX1P22670 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
RFX1P22670 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX1P22670 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX1P22670 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC16.16■□□□□ 0.18
RFX1P22670 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.16■□□□□ 0.18
RFX1P22670 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX1P22670 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
RFX1P22670 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RFX1P22670 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.16■□□□□ 0.18
RFX1P22670 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
RFX1P22670 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX1P22670 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX1P22670 AP001267.2-201ENST00000532619 2086 ntBASIC16.16■□□□□ 0.18
RFX1P22670 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX1P22670 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.16■□□□□ 0.18
RFX1P22670 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX1P22670 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX1P22670 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RFX1P22670 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.16■□□□□ 0.18
RFX1P22670 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.16■□□□□ 0.18
RFX1P22670 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX1P22670 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC16.16■□□□□ 0.18
RFX1P22670 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RFX1P22670 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
RFX1P22670 FAM86HP-204ENST00000513466 959 ntBASIC16.16■□□□□ 0.18
RFX1P22670 NEU3-202ENST00000526068 431 ntTSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms