Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
SIX3O95343 AC236430.1-201ENST00000402231 743 ntBASIC14.53□□□□□ -0.08
SIX3O95343 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.53□□□□□ -0.08
SIX3O95343 FAM207CP-201ENST00000443486 507 ntBASIC14.53□□□□□ -0.08
SIX3O95343 BCRP1-201ENST00000444246 691 ntBASIC14.53□□□□□ -0.08
SIX3O95343 KRT18P25-201ENST00000508931 1278 ntBASIC14.53□□□□□ -0.08
SIX3O95343 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.53□□□□□ -0.08
SIX3O95343 AC131206.1-201ENST00000538078 1211 ntBASIC14.53□□□□□ -0.08
SIX3O95343 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.53□□□□□ -0.08
SIX3O95343 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SIX3O95343 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.53□□□□□ -0.08
SIX3O95343 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
SIX3O95343 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SIX3O95343 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.53□□□□□ -0.08
SIX3O95343 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.53□□□□□ -0.08
SIX3O95343 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 AC020910.5-201ENST00000623668 1865 ntBASIC14.52□□□□□ -0.08
SIX3O95343 INE2-201ENST00000630399 1874 ntBASIC14.52□□□□□ -0.08
SIX3O95343 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.52□□□□□ -0.08
SIX3O95343 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.52□□□□□ -0.08
SIX3O95343 RN7SL832P-201ENST00000607781 1756 ntBASIC14.52□□□□□ -0.08
SIX3O95343 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SIX3O95343 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.52□□□□□ -0.08
SIX3O95343 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SIX3O95343 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.52□□□□□ -0.08
SIX3O95343 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.08
SIX3O95343 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SIX3O95343 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SIX3O95343 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
SIX3O95343 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SIX3O95343 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SIX3O95343 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SIX3O95343 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
SIX3O95343 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
SIX3O95343 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SIX3O95343 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.52□□□□□ -0.09
SIX3O95343 RN7SKP230-201ENST00000365642 335 ntBASIC14.52□□□□□ -0.09
SIX3O95343 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.09
SIX3O95343 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SIX3O95343 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.52□□□□□ -0.09
SIX3O95343 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SIX3O95343 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.52□□□□□ -0.09
SIX3O95343 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SIX3O95343 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SIX3O95343 AL162726.2-201ENST00000438986 1017 ntBASIC14.52□□□□□ -0.09
SIX3O95343 AC002472.2-201ENST00000442739 958 ntBASIC14.52□□□□□ -0.09
SIX3O95343 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
SIX3O95343 AC022137.2-201ENST00000503482 481 ntBASIC14.52□□□□□ -0.09
SIX3O95343 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
SIX3O95343 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.52□□□□□ -0.09
SIX3O95343 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.52□□□□□ -0.09
SIX3O95343 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
SIX3O95343 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SIX3O95343 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SIX3O95343 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
SIX3O95343 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SIX3O95343 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.52□□□□□ -0.09
SIX3O95343 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SIX3O95343 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.52□□□□□ -0.09
SIX3O95343 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SIX3O95343 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SIX3O95343 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SIX3O95343 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SIX3O95343 AC067750.1-201ENST00000608826 6545 ntBASIC14.51□□□□□ -0.09
SIX3O95343 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SIX3O95343 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SIX3O95343 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SIX3O95343 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.51□□□□□ -0.09
SIX3O95343 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SIX3O95343 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.51□□□□□ -0.09
SIX3O95343 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SIX3O95343 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SIX3O95343 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
SIX3O95343 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SIX3O95343 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
SIX3O95343 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.51□□□□□ -0.09
SIX3O95343 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SIX3O95343 MRPL37P1-201ENST00000592451 1337 ntBASIC14.51□□□□□ -0.09
SIX3O95343 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SIX3O95343 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
SIX3O95343 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.51□□□□□ -0.09
SIX3O95343 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SIX3O95343 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SIX3O95343 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SIX3O95343 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SIX3O95343 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.51□□□□□ -0.09
SIX3O95343 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SIX3O95343 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.51□□□□□ -0.09
SIX3O95343 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SIX3O95343 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms