Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 HOMER2P2-201ENST00000451621 847 ntBASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 AP006547.1-201ENST00000563435 692 ntBASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 RN7SL48P-201ENST00000579283 293 ntBASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 AC104982.3-201ENST00000581995 514 ntBASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 KC6-205ENST00000599934 556 ntTSL 4 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 AC007686.3-201ENST00000619017 3487 ntBASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PCDHB1Q9Y5F3 SALL4P5-201ENST00000419001 1760 ntBASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 FNTAP2-201ENST00000430308 634 ntBASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 AC005077.2-201ENST00000449786 690 ntBASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 RPSAP36-202ENST00000494591 1261 ntBASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDHB1Q9Y5F3 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms