Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 AL645937.2-201ENST00000396808 931 ntBASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 C1QBPP1-201ENST00000400117 770 ntBASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 AL359711.2-201ENST00000563105 872 ntBASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 LINC02560-201ENST00000596379 459 ntBASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 AL096865.1-201ENST00000606796 927 ntBASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 BX539320.1-201ENST00000623759 877 ntBASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 AL391825.1-201ENST00000457671 1364 ntBASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 AC087499.6-201ENST00000411576 835 ntBASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 AL442647.2-201ENST00000429864 857 ntBASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 FAM207CP-201ENST00000443486 507 ntBASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 MYCLP2-201ENST00000449268 967 ntBASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 AP001582.1-201ENST00000525856 295 ntBASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 SPCS2P1-201ENST00000561636 679 ntBASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 SPDYE22P-201ENST00000582158 798 ntBASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 RN7SL204P-201ENST00000582831 262 ntBASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 AC007431.3-201ENST00000623221 587 ntBASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 AC008761.3-201ENST00000624803 892 ntBASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 AC023090.2-201ENST00000625182 2110 ntBASIC13.06□□□□□ -0.32
RHBDD3Q9Y3P4 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms