Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 AC015909.3-201ENST00000572855 1794 ntBASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 MTHFR-210ENST00000641407 2387 ntBASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 OR2R1P-201ENST00000441404 914 ntBASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 AL353637.1-201ENST00000451571 732 ntBASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 IGLV3-15-201ENST00000518356 244 ntBASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 AC003686.1-201ENST00000550956 1034 ntBASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 COG4-212ENST00000564653 590 ntTSL 5 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 MIR4706-201ENST00000582134 82 ntBASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 RN7SL190P-201ENST00000582519 257 ntBASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 AL109837.1-201ENST00000603272 613 ntBASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 STK26-204ENST00000481105 1835 ntTSL 2 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
PAAF1Q9BRP4 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 LBH-202ENST00000401506 485 ntTSL 3 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 AC009093.10-201ENST00000641956 1442 ntBASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PAAF1Q9BRP4 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
PAAF1Q9BRP4 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms