Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC4.65□□□□□ -1.67
SYNE1Q8NF91 AC093433.1-201ENST00000458048 571 ntBASIC4.65□□□□□ -1.67
SYNE1Q8NF91 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC4.65□□□□□ -1.67
SYNE1Q8NF91 RPL13AP25-201ENST00000484130 612 ntBASIC4.65□□□□□ -1.67
SYNE1Q8NF91 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
SYNE1Q8NF91 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC4.65□□□□□ -1.67
SYNE1Q8NF91 BX539320.1-201ENST00000623759 877 ntBASIC4.65□□□□□ -1.67
SYNE1Q8NF91 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SYNE1Q8NF91 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC4.65□□□□□ -1.67
SYNE1Q8NF91 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC4.65□□□□□ -1.67
SYNE1Q8NF91 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC138028.6-201ENST00000616106 1482 ntBASIC4.64□□□□□ -1.67
SYNE1Q8NF91 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC020915.2-201ENST00000591325 4227 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 SCN3B-206ENST00000530277 3984 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AMT-233ENST00000636522 1620 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 CNN2P10-201ENST00000443067 918 ntBASIC4.64□□□□□ -1.67
SYNE1Q8NF91 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 OGFR-202ENST00000370461 4506 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 FOS-204ENST00000554617 796 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 RN7SL190P-201ENST00000582519 257 ntBASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 TMEM170A-201ENST00000357613 4959 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 HHAT-208ENST00000545154 3507 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 LIFR-AS1-201ENST00000500733 3803 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 COG4-212ENST00000564653 590 ntTSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC120045.2-201ENST00000567334 178 ntBASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms