Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 BANF1P3-201ENST00000412556 261 ntBASIC18.25■□□□□ 0.51
SYNE4Q8N205 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 PTK2-225ENST00000520892 571 ntTSL 4 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 AL031713.1-201ENST00000564813 661 ntBASIC18.25■□□□□ 0.51
SYNE4Q8N205 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 MIR4522-201ENST00000584932 87 ntBASIC18.25■□□□□ 0.51
SYNE4Q8N205 SIGLEC18P-201ENST00000602271 909 ntBASIC18.25■□□□□ 0.51
SYNE4Q8N205 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 AC018442.1-201ENST00000421439 2061 ntBASIC18.25■□□□□ 0.51
SYNE4Q8N205 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 AC022532.1-201ENST00000624563 1728 ntBASIC18.25■□□□□ 0.51
SYNE4Q8N205 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC18.25■□□□□ 0.51
SYNE4Q8N205 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SYNE4Q8N205 AC092384.3-202ENST00000564646 2873 ntBASIC18.24■□□□□ 0.51
SYNE4Q8N205 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SYNE4Q8N205 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SYNE4Q8N205 AC025271.4-201ENST00000621477 1726 ntBASIC18.24■□□□□ 0.51
SYNE4Q8N205 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SYNE4Q8N205 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 MBP-201ENST00000354542 575 ntTSL 2 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SYNE4Q8N205 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SYNE4Q8N205 AL512430.1-201ENST00000392575 860 ntBASIC18.24■□□□□ 0.51
SYNE4Q8N205 AC079112.1-201ENST00000454972 939 ntBASIC18.24■□□□□ 0.51
SYNE4Q8N205 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SYNE4Q8N205 MIR4649-201ENST00000582839 64 ntBASIC18.24■□□□□ 0.51
SYNE4Q8N205 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 TCAF2P1-201ENST00000291129 2421 ntBASIC18.24■□□□□ 0.51
SYNE4Q8N205 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SYNE4Q8N205 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SYNE4Q8N205 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SYNE4Q8N205 KHSRPP1-201ENST00000427983 1768 ntBASIC18.24■□□□□ 0.51
SYNE4Q8N205 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SYNE4Q8N205 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SYNE4Q8N205 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC18.24■□□□□ 0.51
SYNE4Q8N205 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SYNE4Q8N205 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SYNE4Q8N205 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC18.23■□□□□ 0.51
SYNE4Q8N205 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SYNE4Q8N205 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC18.23■□□□□ 0.51
SYNE4Q8N205 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SYNE4Q8N205 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
SYNE4Q8N205 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
SYNE4Q8N205 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SYNE4Q8N205 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SYNE4Q8N205 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
SYNE4Q8N205 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC18.23■□□□□ 0.51
SYNE4Q8N205 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SYNE4Q8N205 MIR557-201ENST00000385239 98 ntBASIC18.23■□□□□ 0.51
SYNE4Q8N205 AL583805.1-201ENST00000391389 531 ntBASIC18.23■□□□□ 0.51
SYNE4Q8N205 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC18.23■□□□□ 0.51
SYNE4Q8N205 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SYNE4Q8N205 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC18.23■□□□□ 0.51
SYNE4Q8N205 IGHVIII-5-2-201ENST00000522505 261 ntBASIC18.23■□□□□ 0.51
SYNE4Q8N205 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SYNE4Q8N205 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SYNE4Q8N205 MIR3188-201ENST00000583494 85 ntBASIC18.23■□□□□ 0.51
SYNE4Q8N205 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms