Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.31□□□□□ -0.28
CLRN1P58418 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.31□□□□□ -0.28
CLRN1P58418 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.31□□□□□ -0.28
CLRN1P58418 RPL28-203ENST00000428193 573 ntTSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 RPL28-204ENST00000431533 590 ntTSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 AC245100.3-201ENST00000441281 285 ntBASIC13.31□□□□□ -0.28
CLRN1P58418 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC13.31□□□□□ -0.28
CLRN1P58418 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC13.31□□□□□ -0.28
CLRN1P58418 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC13.31□□□□□ -0.28
CLRN1P58418 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
CLRN1P58418 AC022447.6-201ENST00000515522 438 ntBASIC13.31□□□□□ -0.28
CLRN1P58418 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
CLRN1P58418 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.31□□□□□ -0.28
CLRN1P58418 RPL28-207ENST00000558815 616 ntTSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.31□□□□□ -0.28
CLRN1P58418 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC13.31□□□□□ -0.28
CLRN1P58418 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CLRN1P58418 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC13.31□□□□□ -0.28
CLRN1P58418 AL136379.1-201ENST00000623471 2642 ntBASIC13.31□□□□□ -0.28
CLRN1P58418 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 ADAMTS7P1-201ENST00000613213 4793 ntBASIC13.31□□□□□ -0.28
CLRN1P58418 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
CLRN1P58418 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CLRN1P58418 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 AC087386.2-201ENST00000623212 4637 ntBASIC13.31□□□□□ -0.28
CLRN1P58418 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CLRN1P58418 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CLRN1P58418 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.31□□□□□ -0.28
CLRN1P58418 AC005089.1-201ENST00000619486 2241 ntBASIC13.31□□□□□ -0.28
CLRN1P58418 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC13.3□□□□□ -0.28
CLRN1P58418 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 AC007191.1-201ENST00000623179 2995 ntBASIC13.3□□□□□ -0.28
CLRN1P58418 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.3□□□□□ -0.28
CLRN1P58418 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.3□□□□□ -0.28
CLRN1P58418 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.3□□□□□ -0.28
CLRN1P58418 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
CLRN1P58418 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC13.3□□□□□ -0.28
CLRN1P58418 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC13.3□□□□□ -0.28
CLRN1P58418 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC13.3□□□□□ -0.28
CLRN1P58418 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC13.3□□□□□ -0.28
CLRN1P58418 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC13.3□□□□□ -0.28
CLRN1P58418 RN7SL837P-201ENST00000463010 287 ntBASIC13.3□□□□□ -0.28
CLRN1P58418 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC13.3□□□□□ -0.28
CLRN1P58418 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC13.3□□□□□ -0.28
CLRN1P58418 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.3□□□□□ -0.28
CLRN1P58418 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.3□□□□□ -0.28
CLRN1P58418 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.3□□□□□ -0.28
CLRN1P58418 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.3□□□□□ -0.28
CLRN1P58418 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC13.3□□□□□ -0.28
CLRN1P58418 ENPP7P14-201ENST00000621765 1040 ntBASIC13.3□□□□□ -0.28
CLRN1P58418 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CLRN1P58418 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.3□□□□□ -0.28
CLRN1P58418 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.3□□□□□ -0.28
CLRN1P58418 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.3□□□□□ -0.28
CLRN1P58418 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 AC026748.1-201ENST00000624349 3251 ntBASIC13.3□□□□□ -0.28
CLRN1P58418 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.3□□□□□ -0.28
CLRN1P58418 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLRN1P58418 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.3□□□□□ -0.28
CLRN1P58418 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms