Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC11.05□□□□□ -0.64
CMC4P56277 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
CMC4P56277 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC11.05□□□□□ -0.64
CMC4P56277 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
CMC4P56277 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC11.05□□□□□ -0.64
CMC4P56277 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC11.05□□□□□ -0.64
CMC4P56277 PTPA-215ENST00000432124 567 ntTSL 4 BASIC11.05□□□□□ -0.64
CMC4P56277 TUBB8P8-201ENST00000458717 1058 ntBASIC11.05□□□□□ -0.64
CMC4P56277 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC11.05□□□□□ -0.64
CMC4P56277 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
CMC4P56277 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
CMC4P56277 RN7SL560P-201ENST00000577943 264 ntBASIC11.05□□□□□ -0.64
CMC4P56277 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC11.05□□□□□ -0.64
CMC4P56277 AC009884.2-201ENST00000603110 324 ntBASIC11.05□□□□□ -0.64
CMC4P56277 AC073413.1-201ENST00000603927 732 ntBASIC11.05□□□□□ -0.64
CMC4P56277 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC11.05□□□□□ -0.64
CMC4P56277 MIR6074-201ENST00000612054 107 ntBASIC11.05□□□□□ -0.64
CMC4P56277 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC11.05□□□□□ -0.64
CMC4P56277 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
CMC4P56277 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC11.05□□□□□ -0.64
CMC4P56277 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
CMC4P56277 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
CMC4P56277 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
CMC4P56277 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC11.05□□□□□ -0.64
CMC4P56277 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
CMC4P56277 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC11.04□□□□□ -0.64
CMC4P56277 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC11.04□□□□□ -0.64
CMC4P56277 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC11.04□□□□□ -0.64
CMC4P56277 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC11.04□□□□□ -0.64
CMC4P56277 SHC1P1-201ENST00000425230 1745 ntBASIC11.04□□□□□ -0.64
CMC4P56277 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 AC009093.10-201ENST00000641956 1442 ntBASIC11.04□□□□□ -0.64
CMC4P56277 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC11.04□□□□□ -0.64
CMC4P56277 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
CMC4P56277 AK6-201ENST00000380818 1183 ntTSL 2 BASIC11.04□□□□□ -0.64
CMC4P56277 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 BRWD1P1-201ENST00000401091 371 ntBASIC11.04□□□□□ -0.64
CMC4P56277 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC11.04□□□□□ -0.64
CMC4P56277 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC11.04□□□□□ -0.64
CMC4P56277 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC11.04□□□□□ -0.64
CMC4P56277 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC11.04□□□□□ -0.64
CMC4P56277 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC11.04□□□□□ -0.64
CMC4P56277 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CMC4P56277 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC11.04□□□□□ -0.64
CMC4P56277 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC11.04□□□□□ -0.64
CMC4P56277 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC11.04□□□□□ -0.64
CMC4P56277 USB1-203ENST00000539737 1212 ntTSL 2 BASIC11.04□□□□□ -0.64
CMC4P56277 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC11.04□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms