Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
LIM2P55344 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.09□□□□□ -0.15
LIM2P55344 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
LIM2P55344 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 AC006504.5-208ENST00000588784 2401 ntBASIC14.09□□□□□ -0.15
LIM2P55344 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.09□□□□□ -0.15
LIM2P55344 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
LIM2P55344 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.09□□□□□ -0.15
LIM2P55344 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.09□□□□□ -0.15
LIM2P55344 AP005482.1-201ENST00000563722 1273 ntBASIC14.09□□□□□ -0.15
LIM2P55344 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.09□□□□□ -0.15
LIM2P55344 RN7SL713P-201ENST00000582127 302 ntBASIC14.09□□□□□ -0.15
LIM2P55344 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC14.09□□□□□ -0.15
LIM2P55344 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.09□□□□□ -0.15
LIM2P55344 AC073413.1-201ENST00000603927 732 ntBASIC14.09□□□□□ -0.15
LIM2P55344 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.09□□□□□ -0.15
LIM2P55344 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.09□□□□□ -0.15
LIM2P55344 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.09□□□□□ -0.15
LIM2P55344 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
LIM2P55344 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.09□□□□□ -0.15
LIM2P55344 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
LIM2P55344 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.09□□□□□ -0.15
LIM2P55344 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.09□□□□□ -0.15
LIM2P55344 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
LIM2P55344 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.08□□□□□ -0.15
LIM2P55344 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
LIM2P55344 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.08□□□□□ -0.15
LIM2P55344 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.15
LIM2P55344 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
LIM2P55344 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
LIM2P55344 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
LIM2P55344 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.08□□□□□ -0.16
LIM2P55344 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.08□□□□□ -0.16
LIM2P55344 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.08□□□□□ -0.16
LIM2P55344 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
LIM2P55344 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
LIM2P55344 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.08□□□□□ -0.16
LIM2P55344 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
LIM2P55344 AC004945.1-201ENST00000416738 983 ntBASIC14.08□□□□□ -0.16
LIM2P55344 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC14.08□□□□□ -0.16
LIM2P55344 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 AC119751.2-201ENST00000504529 210 ntBASIC14.08□□□□□ -0.16
LIM2P55344 GCOM2-201ENST00000509133 1104 ntBASIC14.08□□□□□ -0.16
LIM2P55344 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.08□□□□□ -0.16
LIM2P55344 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.08□□□□□ -0.16
LIM2P55344 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC14.08□□□□□ -0.16
LIM2P55344 AC023310.1-201ENST00000554836 735 ntBASIC14.08□□□□□ -0.16
LIM2P55344 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.08□□□□□ -0.16
LIM2P55344 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.08□□□□□ -0.16
LIM2P55344 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.08□□□□□ -0.16
LIM2P55344 AC133552.6-201ENST00000613406 534 ntBASIC14.08□□□□□ -0.16
LIM2P55344 MIR6805-201ENST00000615055 62 ntBASIC14.08□□□□□ -0.16
LIM2P55344 AC008687.7-202ENST00000637404 953 ntBASIC14.08□□□□□ -0.16
LIM2P55344 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.08□□□□□ -0.16
LIM2P55344 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
LIM2P55344 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.08□□□□□ -0.16
LIM2P55344 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.08□□□□□ -0.16
LIM2P55344 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
LIM2P55344 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.08□□□□□ -0.16
LIM2P55344 AC092135.3-201ENST00000624151 1846 ntBASIC14.08□□□□□ -0.16
LIM2P55344 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms