Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.65□□□□□ -0.22
MSX1P28360 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
MSX1P28360 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
MSX1P28360 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.65□□□□□ -0.22
MSX1P28360 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.65□□□□□ -0.22
MSX1P28360 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
MSX1P28360 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 MIR326-201ENST00000362220 95 ntBASIC13.65□□□□□ -0.22
MSX1P28360 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.65□□□□□ -0.22
MSX1P28360 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.65□□□□□ -0.22
MSX1P28360 FAM8A4P-201ENST00000435433 1213 ntBASIC13.65□□□□□ -0.22
MSX1P28360 Z93015.1-201ENST00000451718 390 ntBASIC13.65□□□□□ -0.22
MSX1P28360 PARP8-218ENST00000513738 596 ntTSL 4 BASIC13.65□□□□□ -0.22
MSX1P28360 AP001258.2-201ENST00000529891 490 ntBASIC13.65□□□□□ -0.22
MSX1P28360 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC13.65□□□□□ -0.22
MSX1P28360 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC13.65□□□□□ -0.22
MSX1P28360 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.65□□□□□ -0.22
MSX1P28360 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.65□□□□□ -0.22
MSX1P28360 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.65□□□□□ -0.22
MSX1P28360 AL022328.3-201ENST00000607943 679 ntBASIC13.65□□□□□ -0.22
MSX1P28360 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.65□□□□□ -0.22
MSX1P28360 ABBA01031663.1-201ENST00000635630 790 ntBASIC13.65□□□□□ -0.22
MSX1P28360 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.65□□□□□ -0.22
MSX1P28360 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 DBET-201ENST00000630918 3363 ntBASIC13.65□□□□□ -0.22
MSX1P28360 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.65□□□□□ -0.23
MSX1P28360 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.23
MSX1P28360 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.65□□□□□ -0.23
MSX1P28360 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC13.64□□□□□ -0.23
MSX1P28360 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.64□□□□□ -0.23
MSX1P28360 AP000593.2-201ENST00000542775 1433 ntBASIC13.64□□□□□ -0.23
MSX1P28360 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.64□□□□□ -0.23
MSX1P28360 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
MSX1P28360 TNRC18P2-201ENST00000417666 2714 ntBASIC13.64□□□□□ -0.23
MSX1P28360 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.64□□□□□ -0.23
MSX1P28360 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
MSX1P28360 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.64□□□□□ -0.23
MSX1P28360 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
MSX1P28360 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.64□□□□□ -0.23
MSX1P28360 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 AC078819.1-201ENST00000547454 765 ntBASIC13.64□□□□□ -0.23
MSX1P28360 AC012085.1-201ENST00000548270 765 ntBASIC13.64□□□□□ -0.23
MSX1P28360 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.64□□□□□ -0.23
MSX1P28360 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC13.64□□□□□ -0.23
MSX1P28360 AC013391.2-201ENST00000559041 501 ntTSL 5 BASIC13.64□□□□□ -0.23
MSX1P28360 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
MSX1P28360 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.64□□□□□ -0.23
MSX1P28360 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.64□□□□□ -0.23
MSX1P28360 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.64□□□□□ -0.23
MSX1P28360 ECM1P1-201ENST00000604092 1279 ntBASIC13.64□□□□□ -0.23
MSX1P28360 AC138696.2-201ENST00000607376 223 ntBASIC13.64□□□□□ -0.23
MSX1P28360 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
MSX1P28360 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
MSX1P28360 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX1P28360 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.64□□□□□ -0.23
MSX1P28360 AHCYP2-201ENST00000430630 1300 ntBASIC13.64□□□□□ -0.23
MSX1P28360 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
MSX1P28360 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.64□□□□□ -0.23
MSX1P28360 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX1P28360 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX1P28360 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.63□□□□□ -0.23
MSX1P28360 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX1P28360 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX1P28360 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms