Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC104457.1-201ENST00000401024 814 ntBASIC11.24□□□□□ -0.61
HLA-DQA1P01909 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 CRYGEP-201ENST00000412192 528 ntBASIC11.24□□□□□ -0.61
HLA-DQA1P01909 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 AC098859.1-201ENST00000502915 1238 ntBASIC11.24□□□□□ -0.61
HLA-DQA1P01909 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 RNA5SP415-201ENST00000517246 115 ntBASIC11.24□□□□□ -0.61
HLA-DQA1P01909 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 TCAP-202ENST00000578283 583 ntTSL 5 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC11.24□□□□□ -0.61
HLA-DQA1P01909 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 HLA-A-201ENST00000376802 1334 ntBASIC11.24□□□□□ -0.61
HLA-DQA1P01909 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 STXBP5L-201ENST00000273666 9496 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 AC012617.1-204ENST00000586340 2305 ntBASIC11.24□□□□□ -0.61
HLA-DQA1P01909 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 CYP4F24P-201ENST00000586049 1580 ntBASIC11.24□□□□□ -0.61
HLA-DQA1P01909 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 AL805961.2-201ENST00000642139 4817 ntBASIC11.24□□□□□ -0.61
HLA-DQA1P01909 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 AL357143.1-202ENST00000640531 5777 ntTSL 5 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 TK1-203ENST00000588734 1681 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DQA1P01909 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 DYSF-202ENST00000394120 6543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 UNC93B6-202ENST00000528242 690 ntBASIC11.23□□□□□ -0.61
HLA-DQA1P01909 MAL2-202ENST00000531508 892 ntTSL 3 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 AC104109.2-201ENST00000602919 1418 ntBASIC11.23□□□□□ -0.61
HLA-DQA1P01909 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
HLA-DQA1P01909 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms