Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 E2F3P2-201ENST00000447755 1422 ntBASIC16.7■□□□□ 0.26
CHMP2AO43633 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CHMP2AO43633 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.7■□□□□ 0.26
CHMP2AO43633 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC16.7■□□□□ 0.26
CHMP2AO43633 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC16.7■□□□□ 0.26
CHMP2AO43633 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC16.7■□□□□ 0.26
CHMP2AO43633 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CHMP2AO43633 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CHMP2AO43633 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.7■□□□□ 0.26
CHMP2AO43633 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.7■□□□□ 0.26
CHMP2AO43633 AC005730.2-201ENST00000564549 1184 ntBASIC16.7■□□□□ 0.26
CHMP2AO43633 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 MIR6869-201ENST00000619434 62 ntBASIC16.7■□□□□ 0.26
CHMP2AO43633 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.7■□□□□ 0.26
CHMP2AO43633 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CHMP2AO43633 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
CHMP2AO43633 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
CHMP2AO43633 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.7■□□□□ 0.26
CHMP2AO43633 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP2AO43633 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CHMP2AO43633 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.69■□□□□ 0.26
CHMP2AO43633 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CHMP2AO43633 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
CHMP2AO43633 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.69■□□□□ 0.26
CHMP2AO43633 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.69■□□□□ 0.26
CHMP2AO43633 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CHMP2AO43633 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CHMP2AO43633 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.69■□□□□ 0.26
CHMP2AO43633 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC16.69■□□□□ 0.26
CHMP2AO43633 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
CHMP2AO43633 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC16.69■□□□□ 0.26
CHMP2AO43633 CD74-212ENST00000524315 584 ntTSL 5 BASIC16.69■□□□□ 0.26
CHMP2AO43633 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC16.69■□□□□ 0.26
CHMP2AO43633 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.69■□□□□ 0.26
CHMP2AO43633 MIR4525-201ENST00000580000 75 ntBASIC16.69■□□□□ 0.26
CHMP2AO43633 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 SHC1P1-201ENST00000425230 1745 ntBASIC16.69■□□□□ 0.26
CHMP2AO43633 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CHMP2AO43633 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.69■□□□□ 0.26
CHMP2AO43633 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.69■□□□□ 0.26
CHMP2AO43633 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
CHMP2AO43633 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
CHMP2AO43633 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.69■□□□□ 0.26
CHMP2AO43633 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CHMP2AO43633 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CHMP2AO43633 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.69■□□□□ 0.26
CHMP2AO43633 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CHMP2AO43633 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP2AO43633 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CHMP2AO43633 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.68■□□□□ 0.26
CHMP2AO43633 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP2AO43633 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP2AO43633 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP2AO43633 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP2AO43633 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP2AO43633 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.68■□□□□ 0.26
CHMP2AO43633 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC16.68■□□□□ 0.26
CHMP2AO43633 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CHMP2AO43633 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.68■□□□□ 0.26
CHMP2AO43633 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms