Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZC3H4Q9UPT8 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZC3H4Q9UPT8 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZC3H4Q9UPT8 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC17.75■□□□□ 0.43
ZC3H4Q9UPT8 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 HLA-DPA2-205ENST00000433582 733 ntBASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 AC063952.3-201ENST00000467756 308 ntBASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 IGHEP1-201ENST00000521393 651 ntBASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 KRT8P1-201ENST00000557533 1207 ntBASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 SRP14-204ENST00000558720 780 ntTSL 2 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 FTX-216ENST00000638985 1367 ntTSL 5 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZC3H4Q9UPT8 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 AL451000.1-201ENST00000451300 1186 ntBASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 RPL18AP8-201ENST00000486071 528 ntBASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 AC025183.3-201ENST00000623526 1482 ntBASIC17.73■□□□□ 0.43
ZC3H4Q9UPT8 KRT17P5-201ENST00000332088 839 ntBASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 AC093826.1-201ENST00000508655 993 ntBASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZC3H4Q9UPT8 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms