Protein–RNA interactions for Protein: Q9UBN7

HDAC6, Histone deacetylase 6, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6Q9UBN7 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 AL354877.1-201ENST00000424412 413 ntBASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 MESTP3-201ENST00000503460 968 ntBASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 PARP8-218ENST00000513738 596 ntTSL 4 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 BANP-203ENST00000393207 2438 ntTSL 2 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC6Q9UBN7 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 AL157414.3-201ENST00000624276 1954 ntBASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 AC140479.7-201ENST00000636301 2332 ntBASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 AL136309.1-201ENST00000403917 691 ntBASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 CYP46A4P-201ENST00000414953 267 ntBASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 KRTAP19-9P-201ENST00000421795 191 ntBASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 AC105129.2-201ENST00000559536 390 ntBASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 AC138649.2-201ENST00000615886 705 ntBASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC6Q9UBN7 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC6Q9UBN7 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
HDAC6Q9UBN7 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC16.79■□□□□ 0.28
HDAC6Q9UBN7 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC6Q9UBN7 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
HDAC6Q9UBN7 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC6Q9UBN7 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
HDAC6Q9UBN7 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
HDAC6Q9UBN7 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC6Q9UBN7 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC16.79■□□□□ 0.28
HDAC6Q9UBN7 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC6Q9UBN7 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC6Q9UBN7 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDAC6Q9UBN7 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms