Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 CACNA1C-209ENST00000399603 7377 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 HNRNPFP1-201ENST00000391730 1133 ntBASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 BX842568.4-201ENST00000421222 227 ntBASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 AC025048.3-201ENST00000590609 569 ntBASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 AC005702.4-201ENST00000618393 416 ntBASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 AL121723.1-201ENST00000445194 1519 ntBASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 SLC9A7P1-202ENST00000556476 2239 ntBASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 Z82170.1-201ENST00000625081 3192 ntBASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 AC090114.2-201ENST00000608477 7054 ntBASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 AC007787.1-201ENST00000588095 1583 ntBASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 TCAF1P1-201ENST00000414990 2232 ntBASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 LINC01115-203ENST00000606068 577 ntBASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 AC011474.4-201ENST00000623523 2076 ntBASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 AC018529.2-202ENST00000611482 3087 ntBASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CHMP1AQ9HD42 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms