Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC23.66■■□□□ 1.38
IFT140Q96RY7 TPT1P6-201ENST00000458298 514 ntBASIC23.66■■□□□ 1.38
IFT140Q96RY7 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
IFT140Q96RY7 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
IFT140Q96RY7 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC23.66■■□□□ 1.38
IFT140Q96RY7 AC084262.1-201ENST00000567818 751 ntBASIC23.66■■□□□ 1.38
IFT140Q96RY7 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC23.66■■□□□ 1.38
IFT140Q96RY7 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC23.66■■□□□ 1.38
IFT140Q96RY7 AC048382.6-201ENST00000621980 1223 ntBASIC23.66■■□□□ 1.38
IFT140Q96RY7 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
IFT140Q96RY7 AC005865.2-202ENST00000635814 725 ntBASIC23.66■■□□□ 1.38
IFT140Q96RY7 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
IFT140Q96RY7 GOLGA8UP-201ENST00000527159 1755 ntBASIC23.66■■□□□ 1.38
IFT140Q96RY7 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC23.66■■□□□ 1.38
IFT140Q96RY7 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
IFT140Q96RY7 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
IFT140Q96RY7 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
IFT140Q96RY7 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
IFT140Q96RY7 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC23.65■■□□□ 1.38
IFT140Q96RY7 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC23.65■■□□□ 1.38
IFT140Q96RY7 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
IFT140Q96RY7 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
IFT140Q96RY7 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
IFT140Q96RY7 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC23.65■■□□□ 1.38
IFT140Q96RY7 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
IFT140Q96RY7 AC103563.1-201ENST00000429316 123 ntBASIC23.65■■□□□ 1.38
IFT140Q96RY7 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC23.65■■□□□ 1.38
IFT140Q96RY7 RN7SL523P-201ENST00000484401 298 ntBASIC23.65■■□□□ 1.38
IFT140Q96RY7 AC090820.1-201ENST00000519722 591 ntBASIC23.65■■□□□ 1.38
IFT140Q96RY7 EEF1DP7-201ENST00000580496 513 ntBASIC23.65■■□□□ 1.38
IFT140Q96RY7 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC23.65■■□□□ 1.38
IFT140Q96RY7 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC23.65■■□□□ 1.38
IFT140Q96RY7 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
IFT140Q96RY7 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.65■■□□□ 1.38
IFT140Q96RY7 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC23.65■■□□□ 1.38
IFT140Q96RY7 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
IFT140Q96RY7 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
IFT140Q96RY7 C18orf15-201ENST00000623680 2534 ntBASIC23.64■■□□□ 1.38
IFT140Q96RY7 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
IFT140Q96RY7 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC23.64■■□□□ 1.38
IFT140Q96RY7 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
IFT140Q96RY7 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC23.64■■□□□ 1.38
IFT140Q96RY7 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC23.64■■□□□ 1.38
IFT140Q96RY7 EEF1DP2-201ENST00000433698 843 ntBASIC23.64■■□□□ 1.38
IFT140Q96RY7 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC23.64■■□□□ 1.38
IFT140Q96RY7 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC23.64■■□□□ 1.38
IFT140Q96RY7 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC23.64■■□□□ 1.38
IFT140Q96RY7 RNU1-80P-201ENST00000459500 161 ntBASIC23.64■■□□□ 1.38
IFT140Q96RY7 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.38
IFT140Q96RY7 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
IFT140Q96RY7 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC23.64■■□□□ 1.38
IFT140Q96RY7 MT3-202ENST00000561640 514 ntTSL 3 BASIC23.64■■□□□ 1.38
IFT140Q96RY7 CICP23-201ENST00000605013 2741 ntBASIC23.64■■□□□ 1.37
IFT140Q96RY7 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
IFT140Q96RY7 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC23.64■■□□□ 1.37
IFT140Q96RY7 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
IFT140Q96RY7 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC23.64■■□□□ 1.37
IFT140Q96RY7 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
IFT140Q96RY7 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
IFT140Q96RY7 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
IFT140Q96RY7 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
IFT140Q96RY7 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC23.64■■□□□ 1.37
IFT140Q96RY7 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
IFT140Q96RY7 AC020658.6-201ENST00000623564 1870 ntBASIC23.64■■□□□ 1.37
IFT140Q96RY7 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
IFT140Q96RY7 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC23.63■■□□□ 1.37
IFT140Q96RY7 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
IFT140Q96RY7 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
IFT140Q96RY7 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
IFT140Q96RY7 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
IFT140Q96RY7 RPL18AP16-201ENST00000424057 531 ntBASIC23.63■■□□□ 1.37
IFT140Q96RY7 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC23.63■■□□□ 1.37
IFT140Q96RY7 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC23.63■■□□□ 1.37
IFT140Q96RY7 SNRPD2P2-201ENST00000473818 333 ntBASIC23.63■■□□□ 1.37
IFT140Q96RY7 NF1P11-201ENST00000621292 1282 ntBASIC23.63■■□□□ 1.37
IFT140Q96RY7 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
IFT140Q96RY7 LINC00115-201ENST00000473798 1317 ntBASIC23.63■■□□□ 1.37
IFT140Q96RY7 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
IFT140Q96RY7 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
IFT140Q96RY7 PCDHA1-201ENST00000378133 2726 ntBASIC23.63■■□□□ 1.37
IFT140Q96RY7 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
IFT140Q96RY7 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
IFT140Q96RY7 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC23.63■■□□□ 1.37
IFT140Q96RY7 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
IFT140Q96RY7 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
IFT140Q96RY7 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC23.62■■□□□ 1.37
IFT140Q96RY7 SNRPCP15-201ENST00000424055 192 ntBASIC23.62■■□□□ 1.37
IFT140Q96RY7 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
IFT140Q96RY7 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
IFT140Q96RY7 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC23.62■■□□□ 1.37
IFT140Q96RY7 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
IFT140Q96RY7 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC23.62■■□□□ 1.37
IFT140Q96RY7 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC23.62■■□□□ 1.37
IFT140Q96RY7 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC23.62■■□□□ 1.37
IFT140Q96RY7 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
IFT140Q96RY7 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
IFT140Q96RY7 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC23.62■■□□□ 1.37
IFT140Q96RY7 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
IFT140Q96RY7 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
IFT140Q96RY7 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms