Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 AC078875.1-201ENST00000431907 724 ntBASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 IMP3P2-201ENST00000489760 475 ntBASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 CU633904.3-201ENST00000624042 1029 ntBASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
UBE3BQ7Z3V4 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC18.39■□□□□ 0.54
UBE3BQ7Z3V4 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 MSRA-203ENST00000441698 788 ntTSL 2 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 UPF3AP2-201ENST00000457924 1132 ntBASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 AC012618.1-201ENST00000461223 412 ntBASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 NUP210P1-202ENST00000504322 710 ntBASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 AC245884.6-201ENST00000515672 1067 ntBASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 RNA5SP423-201ENST00000517127 109 ntBASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 PAM16-211ENST00000575848 518 ntTSL 3 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 GPI-205ENST00000586425 1799 ntTSL 5 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 TPO-203ENST00000346956 2923 ntTSL 5 BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBE3BQ7Z3V4 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 AL596276.2-201ENST00000447525 331 ntBASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 AL133466.1-201ENST00000447582 150 ntBASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 AC106872.11-201ENST00000605838 421 ntBASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 AF254983.2-201ENST00000612331 135 ntBASIC18.38■□□□□ 0.53
UBE3BQ7Z3V4 AL157813.1-201ENST00000612996 587 ntBASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms