Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
USP39Q53GS9 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
USP39Q53GS9 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USP39Q53GS9 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.13■□□□□ 0.01
USP39Q53GS9 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC15.13■□□□□ 0.01
USP39Q53GS9 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USP39Q53GS9 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
USP39Q53GS9 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USP39Q53GS9 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.13■□□□□ 0.01
USP39Q53GS9 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USP39Q53GS9 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
USP39Q53GS9 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USP39Q53GS9 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USP39Q53GS9 FKBP4P6-201ENST00000457486 1332 ntBASIC15.13■□□□□ 0.01
USP39Q53GS9 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USP39Q53GS9 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.13■□□□□ 0.01
USP39Q53GS9 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
USP39Q53GS9 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USP39Q53GS9 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
USP39Q53GS9 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
USP39Q53GS9 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.12■□□□□ 0.01
USP39Q53GS9 AC004899.1-201ENST00000424687 1714 ntBASIC15.12■□□□□ 0.01
USP39Q53GS9 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.12■□□□□ 0.01
USP39Q53GS9 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
USP39Q53GS9 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.12■□□□□ 0.01
USP39Q53GS9 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
USP39Q53GS9 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 MPV17-204ENST00000399052 749 ntTSL 4 BASIC15.12■□□□□ 0.01
USP39Q53GS9 AC104457.1-201ENST00000401024 814 ntBASIC15.12■□□□□ 0.01
USP39Q53GS9 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.12■□□□□ 0.01
USP39Q53GS9 AC006335.1-201ENST00000445200 547 ntBASIC15.12■□□□□ 0.01
USP39Q53GS9 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC15.12■□□□□ 0.01
USP39Q53GS9 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
USP39Q53GS9 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 AC100827.2-201ENST00000563214 1194 ntBASIC15.12■□□□□ 0.01
USP39Q53GS9 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC15.12■□□□□ 0.01
USP39Q53GS9 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.12■□□□□ 0.01
USP39Q53GS9 RN7SL574P-201ENST00000581512 297 ntBASIC15.12■□□□□ 0.01
USP39Q53GS9 AL136301.1-201ENST00000615830 422 ntBASIC15.12■□□□□ 0.01
USP39Q53GS9 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.12■□□□□ 0.01
USP39Q53GS9 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
USP39Q53GS9 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
USP39Q53GS9 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.12■□□□□ 0.01
USP39Q53GS9 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.12■□□□□ 0.01
USP39Q53GS9 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USP39Q53GS9 LINC02228-204ENST00000642115 2962 ntBASIC15.12■□□□□ 0.01
USP39Q53GS9 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.12■□□□□ 0.01
USP39Q53GS9 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
USP39Q53GS9 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.11■□□□□ 0.01
USP39Q53GS9 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.11■□□□□ 0.01
USP39Q53GS9 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
USP39Q53GS9 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
USP39Q53GS9 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.11■□□□□ 0.01
USP39Q53GS9 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
USP39Q53GS9 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
USP39Q53GS9 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.11■□□□□ 0.01
USP39Q53GS9 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 RPL5P21-201ENST00000404620 815 ntBASIC15.11■□□□□ 0.01
USP39Q53GS9 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
USP39Q53GS9 SLC16A6P1-201ENST00000413214 1059 ntBASIC15.11■□□□□ 0.01
USP39Q53GS9 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC15.11■□□□□ 0.01
USP39Q53GS9 AC104073.2-201ENST00000453737 312 ntBASIC15.11■□□□□ 0.01
USP39Q53GS9 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC15.11■□□□□ 0.01
USP39Q53GS9 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.11■□□□□ 0.01
USP39Q53GS9 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.11■□□□□ 0.01
USP39Q53GS9 MIR5572-201ENST00000583188 137 ntBASIC15.11■□□□□ 0.01
USP39Q53GS9 CENPX-208ENST00000584347 799 ntTSL 2 BASIC15.11■□□□□ 0.01
USP39Q53GS9 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC15.11■□□□□ 0.01
USP39Q53GS9 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 AL157791.1-201ENST00000553667 1699 ntBASIC15.11■□□□□ 0.01
USP39Q53GS9 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.11■□□□□ 0.01
USP39Q53GS9 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
USP39Q53GS9 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.11■□□□□ 0.01
USP39Q53GS9 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
USP39Q53GS9 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms