Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 BTBD7P1-201ENST00000447253 1453 ntBASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 AC092053.3-201ENST00000641308 4975 ntBASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 NSL1-201ENST00000366976 722 ntTSL 2 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 SLC25A24P2-201ENST00000415059 510 ntBASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 AL353705.2-201ENST00000428243 662 ntBASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 CD81-207ENST00000481687 890 ntTSL 2 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 AC108725.1-201ENST00000495472 409 ntBASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 MBP-227ENST00000526111 581 ntTSL 4 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 AC079328.1-201ENST00000560358 952 ntBASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 NAT9-224ENST00000583757 583 ntTSL 3 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 AC243960.2-201ENST00000600996 747 ntBASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC12.46□□□□□ -0.41
PDLIM3Q53GG5 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 AC117489.1-201ENST00000625169 3217 ntBASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
PDLIM3Q53GG5 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 CICP11-201ENST00000434745 2827 ntBASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PDLIM3Q53GG5 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms