Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RPS23-207ENST00000511844 530 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 ABHD17AP9-201ENST00000561925 548 ntBASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 MIR6746-201ENST00000620971 63 ntBASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC88AQ3V6T2 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 AL109809.1-201ENST00000418979 1367 ntBASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 AL591122.2-201ENST00000624125 1853 ntBASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 JTB-202ENST00000356648 1040 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 OR8T1P-201ENST00000421347 918 ntBASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 AC092862.1-201ENST00000541534 533 ntBASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 AC140113.1-201ENST00000603467 169 ntBASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 AL627230.2-201ENST00000613254 655 ntBASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 KRT8P28-201ENST00000433288 1390 ntBASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC88AQ3V6T2 PYY2-201ENST00000315776 282 ntBASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 MIR566-201ENST00000385187 94 ntBASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 CELP-201ENST00000411440 1249 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 TREHP1-201ENST00000531328 465 ntBASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 MIR5001-201ENST00000580185 100 ntBASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC88AQ3V6T2 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms