Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 KRT8P29-201ENST00000420409 1371 ntBASIC14.34□□□□□ -0.11
COL28A1Q2UY09 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 AC105250.1-201ENST00000509378 2057 ntBASIC14.34□□□□□ -0.11
COL28A1Q2UY09 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.34□□□□□ -0.11
COL28A1Q2UY09 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 FAM8A4P-201ENST00000435433 1213 ntBASIC14.34□□□□□ -0.11
COL28A1Q2UY09 RPL7P35-201ENST00000446943 740 ntBASIC14.34□□□□□ -0.11
COL28A1Q2UY09 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 AL023803.2-201ENST00000620080 638 ntBASIC14.34□□□□□ -0.11
COL28A1Q2UY09 AC022748.3-201ENST00000621828 275 ntBASIC14.34□□□□□ -0.11
COL28A1Q2UY09 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 AC023908.3-201ENST00000564211 3047 ntBASIC14.34□□□□□ -0.11
COL28A1Q2UY09 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.34□□□□□ -0.11
COL28A1Q2UY09 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.34□□□□□ -0.11
COL28A1Q2UY09 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL28A1Q2UY09 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL28A1Q2UY09 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL28A1Q2UY09 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL28A1Q2UY09 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.33□□□□□ -0.11
COL28A1Q2UY09 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL28A1Q2UY09 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.33□□□□□ -0.11
COL28A1Q2UY09 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL28A1Q2UY09 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.33□□□□□ -0.11
COL28A1Q2UY09 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.33□□□□□ -0.11
COL28A1Q2UY09 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC14.33□□□□□ -0.11
COL28A1Q2UY09 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
COL28A1Q2UY09 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 AC009090.5-201ENST00000624886 2285 ntBASIC14.33□□□□□ -0.12
COL28A1Q2UY09 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 ACTBP8-201ENST00000403258 1108 ntBASIC14.33□□□□□ -0.12
COL28A1Q2UY09 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 NCK2-206ENST00000522586 490 ntTSL 5 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 RBM8B-201ENST00000555532 525 ntBASIC14.33□□□□□ -0.12
COL28A1Q2UY09 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 AP001002.3-201ENST00000623482 206 ntBASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms