Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.11□□□□□ -0.15
LIM2P55344 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
LIM2P55344 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.11□□□□□ -0.15
LIM2P55344 AC022210.1-201ENST00000449856 793 ntBASIC14.11□□□□□ -0.15
LIM2P55344 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.11□□□□□ -0.15
LIM2P55344 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
LIM2P55344 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.11□□□□□ -0.15
LIM2P55344 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.11□□□□□ -0.15
LIM2P55344 AC131206.1-201ENST00000538078 1211 ntBASIC14.11□□□□□ -0.15
LIM2P55344 AC079316.1-201ENST00000548397 411 ntBASIC14.11□□□□□ -0.15
LIM2P55344 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
LIM2P55344 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.11□□□□□ -0.15
LIM2P55344 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
LIM2P55344 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 HSPA7-201ENST00000445535 1927 ntBASIC14.11□□□□□ -0.15
LIM2P55344 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.11□□□□□ -0.15
LIM2P55344 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.11□□□□□ -0.15
LIM2P55344 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 MYO15B-237ENST00000642007 4893 ntBASIC14.1□□□□□ -0.15
LIM2P55344 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 OR8S1-201ENST00000310194 1080 ntBASIC14.1□□□□□ -0.15
LIM2P55344 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 RN7SKP175-201ENST00000408472 289 ntBASIC14.1□□□□□ -0.15
LIM2P55344 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
LIM2P55344 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 AC026954.1-201ENST00000429771 1293 ntBASIC14.1□□□□□ -0.15
LIM2P55344 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 COX5BP1-201ENST00000507622 393 ntBASIC14.1□□□□□ -0.15
LIM2P55344 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.1□□□□□ -0.15
LIM2P55344 IGHV3-71-201ENST00000523324 359 ntBASIC14.1□□□□□ -0.15
LIM2P55344 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.1□□□□□ -0.15
LIM2P55344 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.1□□□□□ -0.15
LIM2P55344 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.1□□□□□ -0.15
LIM2P55344 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.1□□□□□ -0.15
LIM2P55344 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.1□□□□□ -0.15
LIM2P55344 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC14.1□□□□□ -0.15
LIM2P55344 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC14.1□□□□□ -0.15
LIM2P55344 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.1□□□□□ -0.15
LIM2P55344 AC017083.2-201ENST00000608069 979 ntBASIC14.1□□□□□ -0.15
LIM2P55344 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
LIM2P55344 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.1□□□□□ -0.15
LIM2P55344 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
LIM2P55344 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LIM2P55344 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 AC009093.2-202ENST00000620513 2079 ntBASIC14.1□□□□□ -0.15
LIM2P55344 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.1□□□□□ -0.15
LIM2P55344 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms