Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 AC006480.2-201ENST00000609770 1337 ntBASIC15.97■□□□□ 0.15
VCPP55072 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.97■□□□□ 0.15
VCPP55072 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.97■□□□□ 0.15
VCPP55072 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.97■□□□□ 0.15
VCPP55072 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.97■□□□□ 0.15
VCPP55072 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.97■□□□□ 0.15
VCPP55072 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.97■□□□□ 0.15
VCPP55072 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC15.97■□□□□ 0.15
VCPP55072 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15.97■□□□□ 0.15
VCPP55072 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.97■□□□□ 0.15
VCPP55072 EEF1DP6-201ENST00000449232 372 ntBASIC15.97■□□□□ 0.15
VCPP55072 AL590640.2-201ENST00000457038 527 ntBASIC15.97■□□□□ 0.15
VCPP55072 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 GAPDHP40-201ENST00000505218 1006 ntBASIC15.97■□□□□ 0.15
VCPP55072 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.97■□□□□ 0.15
VCPP55072 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC15.97■□□□□ 0.15
VCPP55072 AC126915.1-201ENST00000522847 1038 ntBASIC15.97■□□□□ 0.15
VCPP55072 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
VCPP55072 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC15.97■□□□□ 0.15
VCPP55072 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15.97■□□□□ 0.15
VCPP55072 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.97■□□□□ 0.15
VCPP55072 AL645728.2-202ENST00000641679 227 ntBASIC15.97■□□□□ 0.15
VCPP55072 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VCPP55072 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.97■□□□□ 0.15
VCPP55072 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.97■□□□□ 0.15
VCPP55072 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
VCPP55072 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
VCPP55072 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.97■□□□□ 0.15
VCPP55072 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VCPP55072 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VCPP55072 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.97■□□□□ 0.15
VCPP55072 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCPP55072 AC007191.1-201ENST00000623179 2995 ntBASIC15.96■□□□□ 0.15
VCPP55072 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCPP55072 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VCPP55072 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
VCPP55072 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.96■□□□□ 0.15
VCPP55072 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.96■□□□□ 0.15
VCPP55072 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCPP55072 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
VCPP55072 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCPP55072 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
VCPP55072 PCDHA3-202ENST00000532566 4594 ntBASIC15.96■□□□□ 0.15
VCPP55072 ACKR1-201ENST00000368121 1240 ntBASIC15.96■□□□□ 0.15
VCPP55072 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCPP55072 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VCPP55072 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC15.96■□□□□ 0.15
VCPP55072 AC104784.1-201ENST00000473096 294 ntBASIC15.96■□□□□ 0.15
VCPP55072 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VCPP55072 COX5BP1-201ENST00000507622 393 ntBASIC15.96■□□□□ 0.15
VCPP55072 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.96■□□□□ 0.15
VCPP55072 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC15.96■□□□□ 0.15
VCPP55072 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.96■□□□□ 0.15
VCPP55072 AL133499.1-201ENST00000596207 608 ntBASIC15.96■□□□□ 0.15
VCPP55072 AC093813.1-201ENST00000605066 256 ntBASIC15.96■□□□□ 0.15
VCPP55072 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.96■□□□□ 0.15
VCPP55072 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.96■□□□□ 0.15
VCPP55072 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.96■□□□□ 0.15
VCPP55072 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.96■□□□□ 0.15
VCPP55072 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCPP55072 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VCPP55072 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
VCPP55072 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.15
VCPP55072 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCPP55072 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.96■□□□□ 0.14
VCPP55072 AC012508.2-201ENST00000567613 1472 ntBASIC15.96■□□□□ 0.14
VCPP55072 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.96■□□□□ 0.14
VCPP55072 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.96■□□□□ 0.14
VCPP55072 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
VCPP55072 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
VCPP55072 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
VCPP55072 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
VCPP55072 REXO1L4P-201ENST00000605109 1937 ntBASIC15.96■□□□□ 0.14
VCPP55072 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
VCPP55072 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
VCPP55072 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.95■□□□□ 0.14
VCPP55072 AL138799.1-201ENST00000448213 1675 ntBASIC15.95■□□□□ 0.14
VCPP55072 AC026748.1-201ENST00000624349 3251 ntBASIC15.95■□□□□ 0.14
VCPP55072 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.95■□□□□ 0.14
VCPP55072 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCPP55072 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms