Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 PKIG-203ENST00000372887 769 ntTSL 3 BASIC12.26□□□□□ -0.45
CDX1P47902 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC12.26□□□□□ -0.45
CDX1P47902 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 TOMM22P5-201ENST00000416399 439 ntBASIC12.26□□□□□ -0.45
CDX1P47902 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 AC104596.2-201ENST00000512793 793 ntBASIC12.26□□□□□ -0.45
CDX1P47902 FADS2-205ENST00000517839 469 ntTSL 3 BASIC12.26□□□□□ -0.45
CDX1P47902 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
CDX1P47902 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC12.26□□□□□ -0.45
CDX1P47902 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC12.26□□□□□ -0.45
CDX1P47902 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
CDX1P47902 AC239800.4-201ENST00000603712 296 ntBASIC12.26□□□□□ -0.45
CDX1P47902 AC093726.1-201ENST00000608064 963 ntBASIC12.26□□□□□ -0.45
CDX1P47902 AC004790.1-201ENST00000612686 536 ntBASIC12.26□□□□□ -0.45
CDX1P47902 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC12.26□□□□□ -0.45
CDX1P47902 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC12.26□□□□□ -0.45
CDX1P47902 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC12.26□□□□□ -0.45
CDX1P47902 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC12.26□□□□□ -0.45
CDX1P47902 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC12.26□□□□□ -0.45
CDX1P47902 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
CDX1P47902 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 AC105250.1-201ENST00000509378 2057 ntBASIC12.26□□□□□ -0.45
CDX1P47902 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC12.26□□□□□ -0.45
CDX1P47902 CU639417.3-201ENST00000624240 1404 ntBASIC12.26□□□□□ -0.45
CDX1P47902 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
CDX1P47902 AC019294.4-201ENST00000561777 2905 ntBASIC12.26□□□□□ -0.45
CDX1P47902 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CDX1P47902 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC12.26□□□□□ -0.45
CDX1P47902 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC12.26□□□□□ -0.45
CDX1P47902 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC12.25□□□□□ -0.45
CDX1P47902 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
CDX1P47902 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC12.25□□□□□ -0.45
CDX1P47902 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC12.25□□□□□ -0.45
CDX1P47902 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC12.25□□□□□ -0.45
CDX1P47902 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC12.25□□□□□ -0.45
CDX1P47902 AC005034.1-201ENST00000426657 489 ntBASIC12.25□□□□□ -0.45
CDX1P47902 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC12.25□□□□□ -0.45
CDX1P47902 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 NME4-207ENST00000450036 985 ntTSL 3 BASIC12.25□□□□□ -0.45
CDX1P47902 GAPDHP21-201ENST00000450301 1010 ntBASIC12.25□□□□□ -0.45
CDX1P47902 AL589987.1-201ENST00000453380 819 ntBASIC12.25□□□□□ -0.45
CDX1P47902 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC12.25□□□□□ -0.45
CDX1P47902 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC12.25□□□□□ -0.45
CDX1P47902 RBM7-207ENST00000544582 692 ntTSL 3 BASIC12.25□□□□□ -0.45
CDX1P47902 HNRNPUP1-201ENST00000554987 333 ntBASIC12.25□□□□□ -0.45
CDX1P47902 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC12.25□□□□□ -0.45
CDX1P47902 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC12.25□□□□□ -0.45
CDX1P47902 CHCHD2P3-201ENST00000603038 451 ntBASIC12.25□□□□□ -0.45
CDX1P47902 LINC01115-203ENST00000606068 577 ntBASIC12.25□□□□□ -0.45
CDX1P47902 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
CDX1P47902 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC12.25□□□□□ -0.45
CDX1P47902 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 AC138969.3-201ENST00000546612 1459 ntBASIC12.25□□□□□ -0.45
CDX1P47902 AC138932.2-201ENST00000548268 1459 ntBASIC12.25□□□□□ -0.45
CDX1P47902 AC126755.4-201ENST00000549796 1459 ntBASIC12.25□□□□□ -0.45
CDX1P47902 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
CDX1P47902 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC12.25□□□□□ -0.45
CDX1P47902 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC12.25□□□□□ -0.45
CDX1P47902 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC12.25□□□□□ -0.45
CDX1P47902 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC12.25□□□□□ -0.45
CDX1P47902 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC12.25□□□□□ -0.45
CDX1P47902 INTS4P1-203ENST00000641008 3683 ntBASIC12.25□□□□□ -0.45
CDX1P47902 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC12.25□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms