Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.93■□□□□ 0.3
SMARCA1P28370 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC16.93■□□□□ 0.3
SMARCA1P28370 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC16.93■□□□□ 0.3
SMARCA1P28370 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.93■□□□□ 0.3
SMARCA1P28370 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.93■□□□□ 0.3
SMARCA1P28370 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SMARCA1P28370 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
SMARCA1P28370 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SMARCA1P28370 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC16.92■□□□□ 0.3
SMARCA1P28370 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.92■□□□□ 0.3
SMARCA1P28370 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.92■□□□□ 0.3
SMARCA1P28370 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 AC090505.1-201ENST00000430515 1834 ntBASIC16.92■□□□□ 0.3
SMARCA1P28370 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 AC104073.2-201ENST00000453737 312 ntBASIC16.92■□□□□ 0.3
SMARCA1P28370 AC006122.1-201ENST00000493323 440 ntBASIC16.92■□□□□ 0.3
SMARCA1P28370 AC106794.1-201ENST00000506935 792 ntBASIC16.92■□□□□ 0.3
SMARCA1P28370 MARK2P5-201ENST00000507649 634 ntBASIC16.92■□□□□ 0.3
SMARCA1P28370 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC16.92■□□□□ 0.3
SMARCA1P28370 AC005740.2-201ENST00000511085 419 ntBASIC16.92■□□□□ 0.3
SMARCA1P28370 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.92■□□□□ 0.3
SMARCA1P28370 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 AC003686.1-201ENST00000550956 1034 ntBASIC16.92■□□□□ 0.3
SMARCA1P28370 MIR4525-201ENST00000580000 75 ntBASIC16.92■□□□□ 0.3
SMARCA1P28370 AL132994.2-201ENST00000603120 687 ntBASIC16.92■□□□□ 0.3
SMARCA1P28370 AC090164.2-201ENST00000611487 516 ntBASIC16.92■□□□□ 0.3
SMARCA1P28370 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC16.92■□□□□ 0.3
SMARCA1P28370 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
SMARCA1P28370 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SMARCA1P28370 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC16.92■□□□□ 0.3
SMARCA1P28370 AC099063.4-201ENST00000641099 1602 ntBASIC16.92■□□□□ 0.3
SMARCA1P28370 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.92■□□□□ 0.3
SMARCA1P28370 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SMARCA1P28370 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.91■□□□□ 0.3
SMARCA1P28370 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.91■□□□□ 0.3
SMARCA1P28370 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SMARCA1P28370 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SMARCA1P28370 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 CYP4F23P-201ENST00000593402 1579 ntBASIC16.91■□□□□ 0.3
SMARCA1P28370 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.91■□□□□ 0.3
SMARCA1P28370 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.91■□□□□ 0.3
SMARCA1P28370 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SMARCA1P28370 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SMARCA1P28370 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
SMARCA1P28370 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SMARCA1P28370 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.91■□□□□ 0.3
SMARCA1P28370 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 NKAIN1P1-201ENST00000435754 582 ntBASIC16.91■□□□□ 0.3
SMARCA1P28370 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.91■□□□□ 0.3
SMARCA1P28370 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC16.91■□□□□ 0.3
SMARCA1P28370 SCARNA21-201ENST00000517026 139 ntBASIC16.91■□□□□ 0.3
SMARCA1P28370 AC044849.1-201ENST00000519737 1188 ntBASIC16.91■□□□□ 0.3
SMARCA1P28370 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.91■□□□□ 0.3
SMARCA1P28370 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.91■□□□□ 0.3
SMARCA1P28370 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
SMARCA1P28370 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.91■□□□□ 0.3
SMARCA1P28370 AC013355.1-201ENST00000562625 723 ntBASIC16.91■□□□□ 0.3
SMARCA1P28370 AC005586.2-201ENST00000563946 837 ntBASIC16.91■□□□□ 0.3
SMARCA1P28370 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SMARCA1P28370 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
SMARCA1P28370 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
SMARCA1P28370 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SMARCA1P28370 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SMARCA1P28370 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
SMARCA1P28370 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SMARCA1P28370 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SMARCA1P28370 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.9■□□□□ 0.3
SMARCA1P28370 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SMARCA1P28370 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.9■□□□□ 0.3
SMARCA1P28370 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms