Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC15.64■□□□□ 0.09
BDNFP23560 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
BDNFP23560 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
BDNFP23560 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.64■□□□□ 0.09
BDNFP23560 AC092135.3-201ENST00000624151 1846 ntBASIC15.64■□□□□ 0.09
BDNFP23560 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
BDNFP23560 AC244394.1-201ENST00000435000 1665 ntBASIC15.63■□□□□ 0.09
BDNFP23560 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.63■□□□□ 0.09
BDNFP23560 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.63■□□□□ 0.09
BDNFP23560 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.63■□□□□ 0.09
BDNFP23560 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
BDNFP23560 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
BDNFP23560 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.63■□□□□ 0.09
BDNFP23560 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC15.63■□□□□ 0.09
BDNFP23560 KLF2P1-201ENST00000447438 1042 ntBASIC15.63■□□□□ 0.09
BDNFP23560 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC15.63■□□□□ 0.09
BDNFP23560 TUBB8P8-201ENST00000458717 1058 ntBASIC15.63■□□□□ 0.09
BDNFP23560 ARTN-209ENST00000479128 471 ntTSL 3 BASIC15.63■□□□□ 0.09
BDNFP23560 AC091804.1-201ENST00000486888 567 ntBASIC15.63■□□□□ 0.09
BDNFP23560 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.63■□□□□ 0.09
BDNFP23560 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.63■□□□□ 0.09
BDNFP23560 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC15.63■□□□□ 0.09
BDNFP23560 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC15.63■□□□□ 0.09
BDNFP23560 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
BDNFP23560 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC15.63■□□□□ 0.09
BDNFP23560 AC244452.3-201ENST00000636814 210 ntBASIC15.63■□□□□ 0.09
BDNFP23560 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
BDNFP23560 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.63■□□□□ 0.09
BDNFP23560 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.63■□□□□ 0.09
BDNFP23560 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
BDNFP23560 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.63■□□□□ 0.09
BDNFP23560 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
BDNFP23560 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.62■□□□□ 0.09
BDNFP23560 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
BDNFP23560 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.62■□□□□ 0.09
BDNFP23560 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC15.62■□□□□ 0.09
BDNFP23560 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC15.62■□□□□ 0.09
BDNFP23560 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
BDNFP23560 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 AKR7A2P1-201ENST00000460134 915 ntBASIC15.62■□□□□ 0.09
BDNFP23560 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.62■□□□□ 0.09
BDNFP23560 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC15.62■□□□□ 0.09
BDNFP23560 EID1-202ENST00000560490 584 ntTSL 3 BASIC15.62■□□□□ 0.09
BDNFP23560 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 AC020914.3-201ENST00000594712 304 ntBASIC15.62■□□□□ 0.09
BDNFP23560 BNIP3P13-201ENST00000599968 566 ntBASIC15.62■□□□□ 0.09
BDNFP23560 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC15.62■□□□□ 0.09
BDNFP23560 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
BDNFP23560 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC15.62■□□□□ 0.09
BDNFP23560 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.62■□□□□ 0.09
BDNFP23560 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
BDNFP23560 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms