Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.15■□□□□ 0.02
COL9A1P20849 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.15■□□□□ 0.02
COL9A1P20849 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
COL9A1P20849 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC15.15■□□□□ 0.02
COL9A1P20849 AL512306.1-201ENST00000432698 848 ntBASIC15.15■□□□□ 0.02
COL9A1P20849 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC15.15■□□□□ 0.02
COL9A1P20849 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC15.15■□□□□ 0.02
COL9A1P20849 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC15.15■□□□□ 0.02
COL9A1P20849 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 AC068831.5-201ENST00000557387 328 ntBASIC15.15■□□□□ 0.02
COL9A1P20849 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC15.15■□□□□ 0.02
COL9A1P20849 AC007326.1-201ENST00000604539 458 ntBASIC15.15■□□□□ 0.02
COL9A1P20849 AP000322.3-201ENST00000608665 388 ntBASIC15.15■□□□□ 0.02
COL9A1P20849 AC020904.3-201ENST00000624199 442 ntBASIC15.15■□□□□ 0.02
COL9A1P20849 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.15■□□□□ 0.02
COL9A1P20849 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.15■□□□□ 0.02
COL9A1P20849 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
COL9A1P20849 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.15■□□□□ 0.02
COL9A1P20849 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.15■□□□□ 0.02
COL9A1P20849 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.15■□□□□ 0.02
COL9A1P20849 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL9A1P20849 KRT18P9-201ENST00000604826 1300 ntBASIC15.15■□□□□ 0.02
COL9A1P20849 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
COL9A1P20849 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
COL9A1P20849 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC15.14■□□□□ 0.01
COL9A1P20849 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
COL9A1P20849 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.14■□□□□ 0.01
COL9A1P20849 AC026691.1-201ENST00000602502 2017 ntBASIC15.14■□□□□ 0.01
COL9A1P20849 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC15.14■□□□□ 0.01
COL9A1P20849 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
COL9A1P20849 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC15.14■□□□□ 0.01
COL9A1P20849 VDAC1P1-201ENST00000439229 848 ntBASIC15.14■□□□□ 0.01
COL9A1P20849 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC15.14■□□□□ 0.01
COL9A1P20849 TMA16-204ENST00000508268 608 ntTSL 2 BASIC15.14■□□□□ 0.01
COL9A1P20849 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
COL9A1P20849 CASP3-205ENST00000517513 964 ntTSL 5 BASIC15.14■□□□□ 0.01
COL9A1P20849 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 TREHP1-201ENST00000531328 465 ntBASIC15.14■□□□□ 0.01
COL9A1P20849 AC092451.2-201ENST00000538746 658 ntBASIC15.14■□□□□ 0.01
COL9A1P20849 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 AC005921.2-201ENST00000574246 670 ntTSL 5 BASIC15.14■□□□□ 0.01
COL9A1P20849 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC15.14■□□□□ 0.01
COL9A1P20849 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC15.14■□□□□ 0.01
COL9A1P20849 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC15.14■□□□□ 0.01
COL9A1P20849 AC009955.4-201ENST00000597192 544 ntBASIC15.14■□□□□ 0.01
COL9A1P20849 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC15.14■□□□□ 0.01
COL9A1P20849 AC138696.2-201ENST00000607376 223 ntBASIC15.14■□□□□ 0.01
COL9A1P20849 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC15.14■□□□□ 0.01
COL9A1P20849 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
COL9A1P20849 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
COL9A1P20849 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
COL9A1P20849 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 E2F3P2-201ENST00000447755 1422 ntBASIC15.14■□□□□ 0.01
COL9A1P20849 LINC01815-202ENST00000641468 1409 ntBASIC15.14■□□□□ 0.01
COL9A1P20849 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
COL9A1P20849 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
COL9A1P20849 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL9A1P20849 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.13■□□□□ 0.01
COL9A1P20849 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.13■□□□□ 0.01
COL9A1P20849 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC15.13■□□□□ 0.01
COL9A1P20849 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL9A1P20849 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL9A1P20849 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL9A1P20849 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.13■□□□□ 0.01
COL9A1P20849 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms